Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47514 * 240.00586 * 3 2 1 5 5 H 1.48501 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47212 * 120.00491 * 3 2 1 7 7 C 1.37875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00361 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47316 * 179.97438 * 9 7 2 11 11 N 1.41598 * 113.99886 * 180.02562 * 10 9 7 12 12 C 1.29186 * 120.00050 * 180.02562 * 11 10 9 13 13 C 1.44762 * 121.21106 * 179.97438 * 12 11 10 14 14 C 1.53556 * 112.77472 * 233.39539 * 13 12 11 15 15 C 1.50316 * 106.52967 * 281.29201 * 14 13 12 16 16 C 1.55047 * 112.89237 * 95.46865 * 15 14 13 17 17 C 1.53779 * 110.55767 * 319.99276 * 16 15 14 18 18 N 1.41119 * 121.20413 * 0.02562 * 12 11 10 19 19 H 0.97001 * 119.99887 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46851 * 60.00048 * 9 7 2 21 21 H 1.08994 * 109.46928 * 300.00505 * 9 7 2 22 22 H 1.09007 * 108.81893 * 112.54081 * 13 12 11 23 23 H 1.08997 * 108.73236 * 354.18549 * 13 12 11 24 24 H 1.09002 * 110.05581 * 40.57639 * 14 13 12 25 25 H 1.08996 * 110.05707 * 162.01026 * 14 13 12 26 26 H 1.08997 * 108.78980 * 216.54734 * 15 14 13 27 27 H 1.09005 * 108.78573 * 334.75599 * 15 14 13 28 28 H 1.09001 * 109.31536 * 199.62712 * 16 15 14 29 29 H 1.09003 * 109.20926 * 80.29517 * 16 15 14 30 30 H 1.08996 * 108.19152 * 196.71507 * 17 16 15 31 31 H 1.09005 * 108.18957 * 80.06258 * 17 16 15 32 32 H 0.96999 * 121.42072 * 291.95995 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 7 1.5706 -4.8637 -0.0024 12 6 2.3028 -5.9280 -0.0030 13 6 1.7079 -7.2477 -0.0032 14 6 2.2338 -8.1369 1.1330 15 6 3.5804 -8.6401 0.6939 16 6 4.7514 -7.7792 1.2339 17 6 4.3926 -6.2848 1.1801 18 7 3.7116 -5.8462 -0.0025 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 1.9236 -7.7306 -0.9564 23 1 0.6279 -7.1449 0.1019 24 1 2.3329 -7.5539 2.0486 25 1 1.5564 -8.9752 1.2956 26 1 3.7035 -9.6649 1.0439 27 1 3.6183 -8.6367 -0.3955 28 1 5.6399 -7.9584 0.6284 29 1 4.9591 -8.0630 2.2657 30 1 5.3138 -5.7100 1.2755 31 1 3.7635 -6.0547 2.0400 32 1 4.1987 -5.5073 -0.7697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307555951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = 5.059261 kcal Electronic energy + Delta-G solvation = -14013.880719 eV Core-core repulsion = 11589.954085 eV Total energy + Delta-G solvation = -2423.926634 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85820 -35.99727 -33.71932 -33.02733 -32.46577 -29.15876 -26.88707 -25.70298 -23.58032 -22.13395 -19.88777 -19.40458 -17.28709 -16.22048 -15.64648 -14.96210 -14.70544 -14.63255 -13.76213 -13.68269 -13.49119 -13.10285 -12.64665 -12.07455 -11.99524 -11.42494 -11.00131 -10.97817 -10.67431 -10.60568 -10.48293 -10.32424 -10.18883 -9.70853 -8.99163 -8.75973 -8.22858 -7.68997 -6.12172 -4.15568 2.64293 3.31141 3.33250 3.36208 3.72813 4.12819 4.43545 4.89592 4.94088 4.95867 5.23925 5.27998 5.32133 5.44669 5.73567 5.77901 5.93407 5.95613 6.08559 6.15844 6.21673 6.25223 6.41691 7.13662 7.49416 7.49658 7.64852 7.84942 8.12375 8.25771 8.70312 8.97924 9.47777 10.99118 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061069 B = 0.005988 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.391237 B = 4674.990444 C = 5011.565130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.204 3.796 10 O -0.219 6.219 11 N -0.359 5.359 12 C 0.336 3.664 13 C -0.074 4.074 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.143 4.143 17 C 0.144 3.856 18 N -0.790 5.790 19 H 0.266 0.734 20 H 0.012 0.988 21 H 0.012 0.988 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 -15.968 1.509 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.129 3.871 10 O -0.238 6.238 11 N -0.106 5.106 12 C 0.057 3.943 13 C -0.114 4.114 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.183 4.183 17 C 0.016 3.984 18 N -0.441 5.441 19 H 0.075 0.925 20 H 0.030 0.970 21 H 0.030 0.970 22 H 0.102 0.898 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.806 -15.465 1.646 16.601 hybrid contribution 1.157 1.004 -0.290 1.559 sum 6.963 -14.461 1.356 16.107 Atomic orbital electron populations 1.69976 1.06098 1.27376 1.49778 1.24925 0.95007 0.99314 0.94965 0.86338 0.79260 0.81682 0.78834 1.19976 1.21013 1.19981 1.20943 0.93934 0.88943 1.51952 0.91677 1.20244 0.89347 0.81167 0.96363 1.89938 1.32589 1.08168 1.93074 1.76555 1.28275 0.92582 1.13205 1.21938 0.82715 0.92819 0.96865 1.19642 1.01102 0.90816 0.99867 1.21130 0.96668 0.98772 0.98162 1.21450 0.94350 0.98306 1.01149 1.22674 0.97879 0.97043 1.00710 1.20324 0.96785 0.92782 0.88550 1.44144 1.03035 1.77914 1.19054 0.92461 0.97018 0.97026 0.89787 0.90076 0.91220 0.91003 0.92944 0.92017 0.92352 0.91808 0.92481 0.93093 0.76592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -15.69 9.43 -34.44 -0.32 -16.02 16 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 9 C 0.20 5.99 6.15 36.01 0.22 6.21 16 10 O -0.22 -5.83 11.00 -11.47 -0.13 -5.96 16 11 N -0.36 -8.08 11.30 32.26 0.36 -7.72 16 12 C 0.34 5.84 6.69 -153.32 -1.03 4.82 16 13 C -0.07 -0.96 5.38 -30.29 -0.16 -1.12 16 14 C -0.11 -1.15 5.73 -27.78 -0.16 -1.31 16 15 C -0.11 -1.11 5.51 -26.99 -0.15 -1.25 16 16 C -0.14 -1.43 6.37 -25.24 -0.16 -1.59 16 17 C 0.14 1.88 5.82 -5.31 -0.03 1.85 16 18 N -0.79 -12.24 5.08 -60.59 -0.31 -12.55 16 19 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 20 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.08 0.96 7.36 -51.92 -0.38 0.58 16 23 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 24 H 0.07 0.82 6.79 -51.93 -0.35 0.46 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.61 7.10 -51.93 -0.37 0.25 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.74 7.09 -51.93 -0.37 0.37 16 32 H 0.40 6.06 8.96 -40.82 -0.37 5.69 16 LS Contribution 266.55 15.07 4.02 4.02 Total: -1.00 -32.61 266.55 -6.99 -39.59 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.76 Total: -1.12 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.89 Total: -6.74 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.79 Total: -46.86 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.13 Total: -5.96 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.61 -6.99 -39.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307555951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.654 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds