Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47514 * 240.00586 * 3 2 1 5 5 H 1.48501 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47212 * 120.00491 * 3 2 1 7 7 C 1.37875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00361 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47316 * 179.97438 * 9 7 2 11 11 N 1.41598 * 113.99886 * 180.02562 * 10 9 7 12 12 C 1.29186 * 120.00050 * 180.02562 * 11 10 9 13 13 C 1.44762 * 121.21106 * 179.97438 * 12 11 10 14 14 C 1.53556 * 112.77472 * 233.39539 * 13 12 11 15 15 C 1.50316 * 106.52967 * 281.29201 * 14 13 12 16 16 C 1.55047 * 112.89237 * 95.46865 * 15 14 13 17 17 C 1.53779 * 110.55767 * 319.99276 * 16 15 14 18 18 N 1.41119 * 121.20413 * 0.02562 * 12 11 10 19 19 H 0.97001 * 119.99887 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46851 * 60.00048 * 9 7 2 21 21 H 1.08994 * 109.46928 * 300.00505 * 9 7 2 22 22 H 1.09007 * 108.81893 * 112.54081 * 13 12 11 23 23 H 1.08997 * 108.73236 * 354.18549 * 13 12 11 24 24 H 1.09002 * 110.05581 * 40.57639 * 14 13 12 25 25 H 1.08996 * 110.05707 * 162.01026 * 14 13 12 26 26 H 1.08997 * 108.78980 * 216.54734 * 15 14 13 27 27 H 1.09005 * 108.78573 * 334.75599 * 15 14 13 28 28 H 1.09001 * 109.31536 * 199.62712 * 16 15 14 29 29 H 1.09003 * 109.20926 * 80.29517 * 16 15 14 30 30 H 1.08996 * 108.19152 * 196.71507 * 17 16 15 31 31 H 1.09005 * 108.18957 * 80.06258 * 17 16 15 32 32 H 0.96999 * 121.42072 * 291.95995 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 7 1.5706 -4.8637 -0.0024 12 6 2.3028 -5.9280 -0.0030 13 6 1.7079 -7.2477 -0.0032 14 6 2.2338 -8.1369 1.1330 15 6 3.5804 -8.6401 0.6939 16 6 4.7514 -7.7792 1.2339 17 6 4.3926 -6.2848 1.1801 18 7 3.7116 -5.8462 -0.0025 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 1.9236 -7.7306 -0.9564 23 1 0.6279 -7.1449 0.1019 24 1 2.3329 -7.5539 2.0486 25 1 1.5564 -8.9752 1.2956 26 1 3.7035 -9.6649 1.0439 27 1 3.6183 -8.6367 -0.3955 28 1 5.6399 -7.9584 0.6284 29 1 4.9591 -8.0630 2.2657 30 1 5.3138 -5.7100 1.2755 31 1 3.7635 -6.0547 2.0400 32 1 4.1987 -5.5073 -0.7697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307555951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = -17.208552 kcal Electronic energy + Delta-G solvation = -14014.846324 eV Core-core repulsion = 11589.954085 eV Total energy + Delta-G solvation = -2424.892239 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07666 -37.80480 -35.37285 -34.42813 -34.12441 -30.68307 -28.90790 -26.81252 -24.88926 -24.18153 -20.80615 -20.72330 -19.09300 -18.25304 -17.02861 -16.67855 -16.08299 -15.67803 -15.64082 -15.28956 -14.85305 -14.32812 -14.09134 -13.62331 -13.13475 -13.01030 -12.84283 -12.58240 -12.21580 -12.16041 -11.74740 -11.53069 -11.45802 -11.26771 -10.93674 -10.80624 -10.17624 -9.09428 -8.37878 -6.54015 1.15352 1.36484 1.43228 1.51303 1.97258 2.40366 2.84271 2.95412 3.98415 4.04257 4.11719 4.17341 4.32674 4.49058 4.73139 4.80788 4.86563 4.94191 5.08051 5.08752 5.12394 5.24828 5.32521 5.39012 5.41406 5.55313 5.74908 5.96490 6.26049 6.57760 6.79350 7.13199 7.18754 8.74888 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061069 B = 0.005988 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.391237 B = 4674.990444 C = 5011.565130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.227 3.773 10 O -0.247 6.247 11 N -0.414 5.414 12 C 0.370 3.630 13 C -0.080 4.080 14 C -0.101 4.101 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.140 3.860 18 N -0.796 5.796 19 H 0.274 0.726 20 H -0.017 1.017 21 H -0.019 1.019 22 H 0.112 0.888 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 -17.178 1.634 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.083 0.917 9 C 0.151 3.849 10 O -0.260 6.260 11 N -0.167 5.167 12 C 0.092 3.908 13 C -0.120 4.120 14 C -0.140 4.140 15 C -0.152 4.152 16 C -0.173 4.173 17 C 0.013 3.987 18 N -0.448 5.448 19 H 0.083 0.917 20 H 0.000 1.000 21 H -0.001 1.001 22 H 0.130 0.870 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.409 -16.685 1.780 18.342 hybrid contribution 0.700 1.138 -0.323 1.374 sum 8.109 -15.547 1.458 17.595 Atomic orbital electron populations 1.70101 1.08017 1.29061 1.49495 1.26070 0.96041 1.03559 0.93363 0.85090 0.77986 0.75887 0.79516 1.18729 1.19573 1.18819 1.21267 0.94093 0.90075 1.53806 0.91750 1.19728 0.89037 0.82709 0.93382 1.89809 1.32259 1.09891 1.94044 1.76738 1.29154 0.91337 1.19515 1.22915 0.83884 0.93200 0.90839 1.19939 1.00890 0.88617 1.02521 1.21151 0.98011 0.98709 0.96121 1.21461 0.93190 0.99384 1.01206 1.22582 0.98609 0.94042 1.02107 1.20487 0.96128 0.95588 0.86507 1.44310 1.02339 1.78235 1.19941 0.91732 0.99956 1.00143 0.87040 0.90289 0.92655 0.88154 0.90470 0.91962 0.91071 0.90254 0.92024 0.95085 0.76355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.99 45.30 29.54 68.60 2.03 47.33 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -34.76 9.43 25.60 0.24 -34.52 16 8 H 0.06 3.93 7.81 -2.91 -0.02 3.91 16 9 C 0.23 14.22 6.15 71.24 0.44 14.66 16 10 O -0.25 -13.87 11.00 -38.78 -0.43 -14.30 16 11 N -0.41 -19.44 11.30 -51.85 -0.59 -20.02 16 12 C 0.37 12.88 6.69 134.70 0.90 13.78 16 13 C -0.08 -1.93 5.38 28.29 0.15 -1.78 16 14 C -0.10 -1.84 5.73 29.91 0.17 -1.67 16 15 C -0.11 -1.77 5.51 30.43 0.17 -1.60 16 16 C -0.13 -2.25 6.37 31.56 0.20 -2.04 16 17 C 0.14 3.50 5.82 87.23 0.51 4.01 16 18 N -0.80 -24.26 5.08 -345.60 -1.75 -26.01 16 19 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 20 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 21 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 22 H 0.11 2.22 7.36 -2.38 -0.02 2.20 16 23 H 0.08 1.99 8.06 -2.39 -0.02 1.97 16 24 H 0.05 1.19 6.79 -2.39 -0.02 1.17 16 25 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.99 7.10 -2.38 -0.02 0.97 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.03 0.89 7.09 -2.38 -0.02 0.87 16 32 H 0.40 12.04 8.96 -92.71 -0.83 11.21 16 Total: -1.00 -73.93 266.55 3.06 -70.87 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.27 Total: 8.07 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 3.24 Total: -8.18 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -2.05 Total: -103.80 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.43 Total: -14.30 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.93 3.06 -70.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307555951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.663 kcal (2) G-P(sol) polarization free energy of solvation -73.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds