Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 110.05945 * 2 1 4 4 C 1.53882 * 110.03333 * 238.58365 * 2 1 3 5 5 H 1.08996 * 110.02648 * 359.97438 * 4 2 1 6 6 C 1.50695 * 110.03271 * 121.42713 * 4 2 1 7 7 H 1.08005 * 119.99988 * 35.22380 * 6 4 2 8 8 C 1.37873 * 119.99958 * 215.22236 * 6 4 2 9 9 N 1.31516 * 120.00153 * 174.65981 * 8 6 4 10 10 Si 1.86795 * 120.00073 * 354.65676 * 8 6 4 11 11 H 1.48496 * 109.47220 * 94.56053 * 10 8 6 12 12 H 1.48508 * 109.47099 * 214.55992 * 10 8 6 13 13 H 1.48501 * 109.47107 * 334.56033 * 10 8 6 14 14 C 1.54266 * 106.59740 * 240.71739 * 4 2 1 15 15 C 1.54887 * 104.20064 * 23.60591 * 14 4 2 16 16 C 1.54269 * 110.03714 * 121.41642 * 2 1 3 17 17 C 1.52997 * 110.49074 * 214.35356 * 16 2 1 18 18 C 1.50700 * 110.48193 * 336.86638 * 16 2 1 19 19 O 1.20826 * 120.00141 * 111.55076 * 18 16 2 20 20 O 1.34233 * 119.99663 * 291.54472 * 18 16 2 21 21 H 1.09004 * 109.46717 * 304.59669 * 1 2 3 22 22 H 1.09001 * 109.47436 * 64.60005 * 1 2 3 23 23 H 1.09008 * 109.47172 * 184.60271 * 1 2 3 24 24 H 0.97000 * 120.00565 * 180.02562 * 9 8 6 25 25 H 1.09005 * 110.48706 * 142.28936 * 14 4 2 26 26 H 1.09000 * 110.48302 * 264.79213 * 14 4 2 27 27 H 1.08992 * 110.75752 * 203.74412 * 15 14 4 28 28 H 1.08996 * 110.75447 * 80.37007 * 15 14 4 29 29 H 1.08999 * 109.46960 * 59.99385 * 17 16 2 30 30 H 1.08995 * 109.47477 * 180.02562 * 17 16 2 31 31 H 1.09008 * 109.46905 * 299.99906 * 17 16 2 32 32 H 0.96701 * 116.99925 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0571 -0.7536 -1.2338 5 1 1.2229 -1.1196 -1.8322 6 6 2.9275 0.1564 -2.0616 7 1 3.5542 0.8912 -1.5780 8 6 2.9238 0.0510 -3.4363 9 7 3.6012 0.9122 -4.1636 10 14 1.9567 -1.3150 -4.2657 11 1 0.6130 -0.8099 -4.6457 12 1 2.6791 -1.7643 -5.4829 13 1 1.8092 -2.4569 -3.3278 14 6 2.8874 -1.9407 -0.7035 15 6 2.3281 -2.1902 0.7191 16 6 2.0585 -0.7555 1.2368 17 6 3.3536 -0.1162 1.7418 18 6 1.0196 -0.7722 2.3283 19 8 0.4834 -1.8103 2.6362 20 8 0.6899 0.3662 2.9586 21 1 -0.3633 0.5835 0.8460 22 1 -0.3634 0.4408 -0.9283 23 1 -0.3634 -1.0244 0.0825 24 1 3.5984 0.8383 -5.1308 25 1 2.7401 -2.8198 -1.3310 26 1 3.9442 -1.6775 -0.6594 27 1 3.0675 -2.6931 1.3422 28 1 1.4031 -2.7651 0.6751 29 1 3.1639 0.9218 2.0151 30 1 3.7122 -0.6623 2.6143 31 1 4.1076 -0.1530 0.9554 32 1 0.0186 0.3055 3.6520 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307587184.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -137.117552 kcal Electronic energy + Delta-G solvation = -15014.942626 eV Core-core repulsion = 12552.557991 eV Total energy + Delta-G solvation = -2462.384634 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.84055 -39.24881 -37.02603 -34.75914 -32.38524 -31.94829 -28.92548 -25.86529 -24.83388 -23.82078 -20.88939 -20.13298 -19.04321 -18.68555 -17.26926 -16.86756 -16.47362 -15.44143 -15.12459 -14.60764 -14.43277 -14.05867 -13.74760 -13.56080 -13.26562 -13.05562 -12.86677 -12.56311 -12.37759 -12.24711 -11.86363 -11.68124 -11.52156 -11.44599 -11.27631 -10.94450 -10.87489 -10.61107 -8.23289 -6.23324 1.25905 1.35767 1.39599 1.49905 2.20643 2.39148 3.10451 3.59204 3.73922 3.94116 4.32137 4.47873 4.50385 4.60220 4.62451 4.69904 4.76040 4.96931 5.02111 5.04526 5.11783 5.18641 5.27954 5.33731 5.47604 5.57590 5.64980 5.71598 5.79859 6.41686 6.82552 7.08173 7.40658 8.93319 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.044164 B = 0.010194 C = 0.010002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.855039 B = 2745.942849 C = 2798.795933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 H 0.069 0.931 4 C 0.012 3.988 5 H 0.031 0.969 6 C -0.497 4.497 7 H 0.040 0.960 8 C 0.010 3.990 9 N -0.951 5.951 10 Si 0.931 3.069 11 H -0.274 1.274 12 H -0.291 1.291 13 H -0.241 1.241 14 C -0.119 4.119 15 C -0.097 4.097 16 C -0.057 4.057 17 C -0.129 4.129 18 C 0.508 3.492 19 O -0.547 6.547 20 O -0.507 6.507 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.263 0.737 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 -3.825 12.271 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 H 0.087 0.913 4 C -0.007 4.007 5 H 0.050 0.950 6 C -0.535 4.535 7 H 0.058 0.942 8 C -0.186 4.186 9 N -0.592 5.592 10 Si 0.756 3.244 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.165 1.165 14 C -0.157 4.157 15 C -0.134 4.134 16 C -0.058 4.058 17 C -0.186 4.186 18 C 0.352 3.648 19 O -0.438 6.438 20 O -0.320 6.320 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -4.960 -4.017 11.880 13.486 hybrid contribution -0.614 -0.263 -0.511 0.841 sum -5.574 -4.280 11.369 13.366 Atomic orbital electron populations 1.22010 0.95174 1.01285 1.02306 1.21803 0.95189 0.99241 0.92311 0.91294 1.19817 0.94471 0.93090 0.93349 0.95039 1.21306 1.23753 1.17422 0.91064 0.94195 1.25866 0.96581 0.97787 0.98364 1.70054 1.45113 1.38018 1.05982 0.85969 0.78749 0.81382 0.78289 1.20015 1.21721 1.16453 1.22641 1.00253 0.98158 0.94685 1.22456 1.01381 0.93222 0.96381 1.21485 0.93816 0.99168 0.91302 1.21741 0.94558 1.00927 1.01384 1.23290 0.80749 0.80461 0.80322 1.90651 1.53841 1.34115 1.65154 1.84572 1.59396 1.36463 1.51595 0.91420 0.92453 0.93169 0.92840 0.92859 0.91963 0.90028 0.91288 0.91173 0.90987 0.91612 0.71584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 7.87 71.98 0.57 -4.50 16 2 C -0.07 -2.51 2.63 -10.07 -0.03 -2.53 16 3 H 0.07 2.81 7.33 -2.39 -0.02 2.79 16 4 C 0.01 0.51 2.01 -10.81 -0.02 0.49 16 5 H 0.03 1.41 5.10 -2.39 -0.01 1.40 16 6 C -0.50 -26.91 8.53 25.60 0.22 -26.69 16 7 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 8 C 0.01 0.59 5.47 84.65 0.46 1.06 16 9 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16 10 Si 0.93 43.51 27.05 68.60 1.86 45.37 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.24 -10.37 6.11 99.48 0.61 -9.77 16 14 C -0.12 -4.63 5.94 31.67 0.19 -4.44 16 15 C -0.10 -3.18 5.46 31.89 0.17 -3.01 16 16 C -0.06 -1.82 0.76 -51.85 -0.04 -1.86 16 17 C -0.13 -3.75 8.26 71.98 0.59 -3.15 16 18 C 0.51 14.95 5.13 71.24 0.37 15.31 16 19 O -0.55 -18.31 16.46 21.96 0.36 -17.95 16 20 O -0.51 -11.57 12.38 -51.45 -0.64 -12.21 16 21 H 0.07 1.98 6.66 -2.39 -0.02 1.96 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 1.66 7.98 -2.38 -0.02 1.64 16 24 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.05 2.03 7.52 -2.38 -0.02 2.01 16 26 H 0.06 2.49 7.35 -2.39 -0.02 2.47 16 27 H 0.08 2.34 8.05 -2.39 -0.02 2.32 16 28 H 0.07 2.32 7.42 -2.39 -0.02 2.30 16 29 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.12 7.33 -2.38 -0.02 2.11 16 32 H 0.42 5.42 9.10 -74.06 -0.67 4.75 16 Total: -1.00 -65.20 256.77 4.70 -60.49 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.34 Total: 11.69 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 2.48 Total: -29.32 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.30 Total: -58.06 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.28 Total: -30.16 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.86 Total: 45.37 kcal Total: -65.20 4.70 -60.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307587184.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.625 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds