Wall clock time and date at job start Mon Mar 30 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48494 * 109.47333 * 270.00171 * 3 2 1 5 5 H 1.48507 * 109.46979 * 30.00304 * 3 2 1 6 6 H 1.48503 * 109.47004 * 149.99913 * 3 2 1 7 7 C 1.37876 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00382 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99787 * 0.27037 * 7 2 1 10 10 N 1.46892 * 109.47095 * 179.72965 * 9 7 2 11 11 C 1.46910 * 111.00317 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.62657 * 37.14544 * 11 10 9 13 13 C 1.53056 * 109.62957 * 276.75337 * 11 10 9 14 14 C 1.51793 * 110.74715 * 325.20984 * 13 11 10 15 15 C 1.51777 * 113.80995 * 293.19557 * 14 13 11 16 16 C 1.52990 * 110.88172 * 66.99856 * 15 14 13 17 17 N 1.47192 * 108.66534 * 273.53279 * 16 15 14 18 18 C 1.33367 * 120.42764 * 71.96378 * 17 16 15 19 19 O 1.21286 * 119.89234 * 179.71113 * 18 17 16 20 20 H 0.97003 * 120.00599 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47470 * 299.73049 * 9 7 2 22 22 H 1.09000 * 109.47233 * 59.72750 * 9 7 2 23 23 H 1.00904 * 111.00307 * 303.95440 * 10 9 7 24 24 H 1.08997 * 109.22831 * 85.53995 * 13 11 10 25 25 H 1.09004 * 109.22275 * 204.92513 * 13 11 10 26 26 H 1.08995 * 108.61541 * 54.31467 * 14 13 11 27 27 H 1.08994 * 108.61583 * 172.07662 * 14 13 11 28 28 H 1.09000 * 109.19816 * 187.36754 * 15 14 13 29 29 H 1.09003 * 109.19630 * 306.64027 * 15 14 13 30 30 H 1.09000 * 109.60249 * 33.29127 * 16 15 14 31 31 H 1.09003 * 109.59835 * 153.61436 * 16 15 14 32 32 H 0.97000 * 119.78818 * 251.95717 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0073 10 7 2.2057 -3.6155 -0.0130 11 6 1.5055 -4.9070 -0.0203 12 1 0.6118 -4.8354 -0.6402 13 6 1.1109 -5.2860 1.4091 14 6 2.1621 -4.8180 2.3991 15 6 3.4941 -5.5325 2.2621 16 6 4.1678 -5.1804 0.9344 17 7 3.6694 -6.0965 -0.1042 18 6 2.4236 -5.9805 -0.5660 19 8 2.0246 -6.7373 -1.4257 20 1 -0.4851 0.8400 0.0004 21 1 0.6244 -2.5615 0.8824 22 1 0.6245 -2.5523 -0.8975 23 1 2.8407 -3.5445 -0.7941 24 1 0.1558 -4.8210 1.6531 25 1 1.0106 -6.3692 1.4785 26 1 2.3239 -3.7497 2.2557 27 1 1.7842 -4.9770 3.4090 28 1 4.1457 -5.2367 3.0843 29 1 3.3295 -6.6091 2.3060 30 1 3.9258 -4.1529 0.6627 31 1 5.2480 -5.2879 1.0328 32 1 4.2508 -6.7891 -0.4553 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307653854.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:52 Heat of formation + Delta-G solvation = -39.530745 kcal Electronic energy + Delta-G solvation = -14735.475574 eV Core-core repulsion = 12309.615372 eV Total energy + Delta-G solvation = -2425.860202 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04805 -36.68074 -34.79415 -33.05790 -32.14363 -29.63728 -26.91359 -24.76854 -23.67641 -21.76876 -19.97112 -19.09520 -17.02771 -16.82187 -15.99479 -15.01912 -14.69736 -14.22421 -13.91716 -13.40339 -13.30028 -12.99426 -12.50125 -12.29646 -11.82224 -11.62785 -11.19930 -10.88700 -10.80000 -10.42230 -10.31863 -10.14812 -10.10596 -9.39097 -9.18209 -8.78987 -8.53178 -7.45934 -6.09441 -4.12381 2.94280 3.28020 3.34737 3.37644 3.64160 4.37049 4.81991 5.00688 5.21766 5.24983 5.27163 5.42819 5.63738 5.67811 6.00641 6.06338 6.14342 6.35192 6.43259 6.49760 6.53715 7.00856 7.03396 7.17549 7.33250 7.55296 7.65774 8.00661 8.15340 8.38547 8.57823 8.95668 9.52869 11.01398 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039440 B = 0.008426 C = 0.008151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.772151 B = 3322.120030 C = 3434.380560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.191 3.809 10 N -0.669 5.669 11 C 0.068 3.932 12 H 0.070 0.930 13 C -0.098 4.098 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.086 3.914 17 N -0.716 5.716 18 C 0.521 3.479 19 O -0.567 6.567 20 H 0.262 0.738 21 H 0.034 0.966 22 H -0.009 1.009 23 H 0.331 0.669 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -8.576 4.266 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.302 5.302 11 C -0.046 4.046 12 H 0.088 0.912 13 C -0.137 4.137 14 C -0.153 4.153 15 C -0.164 4.164 16 C -0.038 4.038 17 N -0.367 5.367 18 C 0.307 3.693 19 O -0.445 6.445 20 H 0.072 0.928 21 H 0.052 0.948 22 H 0.008 0.992 23 H 0.149 0.851 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.445 -8.672 4.595 11.741 hybrid contribution 0.271 0.595 -0.950 1.153 sum 6.716 -8.077 3.645 11.119 Atomic orbital electron populations 1.69955 1.06084 1.26914 1.50433 1.24976 0.94857 0.99369 0.95228 0.86490 0.79758 0.83053 0.78041 1.20768 1.21265 1.19748 1.21110 0.93438 0.90033 1.50942 0.91886 1.19684 0.90589 0.86904 0.96347 1.61065 1.20810 1.00512 1.47768 1.21940 0.95467 0.89620 0.97529 0.91185 1.21231 0.99619 0.99575 0.93270 1.20968 0.93592 1.03749 0.96947 1.21633 0.97660 0.99806 0.97338 1.22409 0.96951 0.97784 0.86634 1.45887 1.13729 1.35501 1.41599 1.20799 0.82717 0.85153 0.80582 1.90702 1.75423 1.45924 1.32479 0.92820 0.94776 0.99163 0.85145 0.91156 0.92944 0.88494 0.93568 0.91503 0.93011 0.85243 0.91306 0.77444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -13.67 9.32 -34.44 -0.32 -13.99 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.19 4.64 5.10 -4.98 -0.03 4.62 16 10 N -0.67 -12.86 2.11 -108.81 -0.23 -13.09 16 11 C 0.07 1.22 2.77 -68.48 -0.19 1.03 16 12 H 0.07 1.39 7.84 -51.93 -0.41 0.99 16 13 C -0.10 -1.58 5.27 -27.31 -0.14 -1.72 16 14 C -0.12 -1.69 5.19 -27.96 -0.15 -1.84 16 15 C -0.13 -1.56 5.74 -27.36 -0.16 -1.71 16 16 C 0.09 1.07 6.42 -3.67 -0.02 1.05 16 17 N -0.72 -9.91 5.27 -59.90 -0.32 -10.22 16 18 C 0.52 9.14 6.48 -11.26 -0.07 9.06 16 19 O -0.57 -11.85 17.92 5.55 0.10 -11.75 16 20 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 21 H 0.03 0.89 7.95 -51.93 -0.41 0.47 16 22 H -0.01 -0.25 8.06 -51.93 -0.42 -0.67 16 23 H 0.33 6.32 7.86 -39.29 -0.31 6.01 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 26 H 0.10 1.68 6.74 -51.93 -0.35 1.33 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 30 H 0.13 1.92 4.74 -51.93 -0.25 1.67 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.39 4.70 8.91 -40.82 -0.36 4.34 16 LS Contribution 257.90 15.07 3.89 3.89 Total: -1.00 -29.75 257.90 -6.59 -36.34 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.57 Total: 6.13 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.18 Total: -2.02 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.19 Total: -48.44 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.10 Total: -11.75 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.75 -6.59 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307653854.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.195 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds