Wall clock time and date at job start Mon Mar 30 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47046 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46873 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47510 * 240.00153 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 O 1.45202 * 109.46867 * 300.00289 * 12 2 1 14 14 C 1.34232 * 116.99450 * 179.97438 * 13 12 2 15 15 O 1.20825 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99784 * 179.97438 * 14 13 12 17 17 C 1.52999 * 117.50050 * 248.74643 * 16 14 13 18 18 C 1.53001 * 117.49886 * 180.08728 * 16 14 13 19 19 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 20 20 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 21 21 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 24 24 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 25 25 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 27 27 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 28 28 H 1.09005 * 115.55146 * 34.41484 * 16 14 13 29 29 H 1.09006 * 117.49774 * 0.02562 * 17 16 14 30 30 H 1.09006 * 117.50060 * 145.01822 * 17 16 14 31 31 H 1.09003 * 117.49412 * 214.97895 * 18 16 14 32 32 H 1.08995 * 117.49832 * 359.97289 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1660 -1.5870 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2494 13 8 1.5559 -0.0366 2.4348 14 6 1.9162 -0.5469 3.6229 15 8 2.6125 -1.5332 3.6707 16 6 1.4521 0.1103 4.8972 17 6 2.5077 0.8081 5.7573 18 6 1.8981 -0.5178 6.2191 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 0.7095 1.1615 -3.4844 26 1 1.6766 -1.7488 1.2494 27 1 3.1299 -0.7208 1.2495 28 1 0.4576 0.5552 4.8616 29 1 3.5379 0.7922 5.4012 30 1 2.2076 1.7119 6.2878 31 1 1.1971 -0.4859 7.0532 32 1 2.5268 -1.4067 6.1671 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308153451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:05 Heat of formation + Delta-G solvation = -89.772262 kcal Electronic energy + Delta-G solvation = -14302.805900 eV Core-core repulsion = 11842.474312 eV Total energy + Delta-G solvation = -2460.331589 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.56169 -38.72386 -37.20614 -36.52601 -33.28344 -28.08757 -27.59591 -27.27620 -25.38907 -23.35828 -21.36586 -20.73686 -18.95255 -17.82510 -17.51495 -17.28864 -16.66215 -15.76101 -15.06844 -14.82671 -14.68085 -14.00448 -13.41204 -13.35429 -13.07374 -12.85641 -12.62362 -12.46751 -12.35491 -12.15283 -11.75806 -11.72927 -11.60323 -11.45785 -11.29619 -11.17077 -10.75103 -10.42392 -8.06310 -6.24761 1.09470 1.41554 1.44139 1.54225 1.77936 2.44462 2.83921 3.17018 3.68347 3.78215 3.94658 4.18023 4.23405 4.25831 4.57576 4.71566 4.80652 4.90408 5.00350 5.02327 5.17916 5.19681 5.20616 5.34701 5.58145 5.61440 5.65186 6.05192 6.15510 6.35071 6.74855 6.82466 7.43447 8.93758 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.064462 B = 0.006842 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.256868 B = 4091.120638 C = 4263.124799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.059 3.941 3 C -0.118 4.118 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.096 3.904 13 O -0.350 6.350 14 C 0.475 3.525 15 O -0.553 6.553 16 C -0.189 4.189 17 C -0.136 4.136 18 C -0.137 4.137 19 H 0.032 0.968 20 H 0.064 0.936 21 H 0.020 0.980 22 H 0.019 0.981 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.155 0.845 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 1.466 13.407 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 C -0.176 4.176 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.023 3.977 13 O -0.266 6.266 14 C 0.321 3.679 15 O -0.444 6.444 16 C -0.207 4.207 17 C -0.173 4.173 18 C -0.174 4.174 19 H 0.051 0.949 20 H 0.083 0.917 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.173 0.827 29 H 0.107 0.893 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.017 1.295 13.223 13.286 hybrid contribution 0.434 -0.733 -1.300 1.554 sum 0.417 0.562 11.923 11.944 Atomic orbital electron populations 1.21622 0.97025 0.98622 1.00371 1.18291 0.93724 0.93347 0.88740 1.21618 0.97743 0.97875 1.00360 1.21224 1.32366 1.12471 0.91208 0.93368 1.25524 0.94922 0.95568 1.01203 1.69946 1.36723 1.23279 1.23862 0.85565 0.78185 0.78625 0.79585 1.19820 1.20429 1.20409 1.23257 0.97410 0.95168 0.81900 1.86505 1.69310 1.55640 1.15132 1.23579 0.76329 0.81709 0.86270 1.90589 1.37909 1.27372 1.88574 1.21909 1.03696 1.08813 0.86312 1.23190 0.96465 0.98241 0.99415 1.23203 1.03230 0.97130 0.93839 0.94892 0.91688 0.96126 0.96139 0.91697 0.94898 0.92757 0.93435 0.93457 0.82736 0.89289 0.83970 0.84066 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.11 71.98 0.58 -5.23 16 2 C 0.06 2.98 0.58 -52.93 -0.03 2.95 16 3 C -0.12 -5.79 8.11 71.98 0.58 -5.21 16 4 C -0.53 -29.25 8.01 25.60 0.21 -29.05 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.03 1.50 5.15 84.65 0.44 1.93 16 7 N -0.90 -49.37 9.35 21.45 0.20 -49.17 16 8 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 C 0.10 4.44 4.26 71.98 0.31 4.75 16 13 O -0.35 -14.39 8.88 -51.44 -0.46 -14.85 16 14 C 0.48 17.24 7.74 71.24 0.55 17.79 16 15 O -0.55 -23.07 16.01 21.97 0.35 -22.72 16 16 C -0.19 -4.56 6.30 -11.54 -0.07 -4.63 16 17 C -0.14 -2.48 10.24 30.62 0.31 -2.17 16 18 C -0.14 -2.54 10.05 30.62 0.31 -2.23 16 19 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 20 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 21 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 24 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 25 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 26 H 0.05 2.24 8.13 -2.39 -0.02 2.22 16 27 H 0.05 2.22 8.13 -2.39 -0.02 2.20 16 28 H 0.16 3.06 8.14 -2.38 -0.02 3.04 16 29 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.14 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.03 7.67 -2.39 -0.02 2.01 16 Total: -1.00 -62.18 269.98 6.39 -55.78 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.09 Total: 7.06 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.18 Total: -21.09 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.20 Total: -49.17 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.11 Total: -37.57 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -62.18 6.39 -55.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308153451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.990 kcal (2) G-P(sol) polarization free energy of solvation -62.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds