Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47338 * 2 1 4 4 C 1.50700 * 109.46914 * 240.00003 * 2 1 3 5 5 H 1.08007 * 120.00081 * 239.99916 * 4 2 1 6 6 C 1.37875 * 120.00440 * 60.00650 * 4 2 1 7 7 N 1.31518 * 119.99457 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00568 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46928 * 59.99390 * 8 6 4 10 10 H 1.48500 * 109.47272 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46763 * 299.99382 * 8 6 4 12 12 O 1.45205 * 109.47213 * 120.00289 * 2 1 3 13 13 C 1.34222 * 116.99502 * 270.00098 * 12 2 1 14 14 O 1.20826 * 120.00923 * 359.97438 * 13 12 2 15 15 C 1.50713 * 119.99697 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.46854 * 185.53901 * 15 13 12 17 17 C 1.52999 * 115.55282 * 279.64082 * 16 15 13 18 18 C 1.53010 * 117.49469 * 133.93969 * 16 15 13 19 19 C 1.53004 * 59.99936 * 252.50989 * 18 16 15 20 20 H 1.08996 * 109.47120 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47073 * 300.00366 * 1 2 3 22 22 H 1.08998 * 109.46896 * 59.99957 * 1 2 3 23 23 H 0.96998 * 119.99970 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.46809 * 305.53997 * 15 13 12 25 25 H 1.09000 * 109.46797 * 65.53762 * 15 13 12 26 26 H 1.08999 * 109.46796 * 65.00873 * 17 16 15 27 27 H 1.08997 * 109.47165 * 185.00604 * 17 16 15 28 28 H 1.08995 * 109.47364 * 305.01003 * 17 16 15 29 29 H 1.09002 * 117.49812 * 359.97438 * 18 16 15 30 30 H 1.08995 * 117.49823 * 145.02149 * 18 16 15 31 31 H 1.09004 * 117.49906 * 252.51757 * 19 18 16 32 32 H 1.08998 * 117.50296 * 107.48763 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0078 10 1 1.8260 -0.4205 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 8 2.0140 -0.6846 1.1855 13 6 2.2171 0.0639 2.2810 14 8 1.9982 1.2518 2.2504 15 6 2.7182 -0.5774 3.5495 16 6 2.7317 0.4597 4.6743 17 6 3.9317 1.4089 4.6825 18 6 2.1516 0.0420 6.0272 19 6 1.3845 1.0200 5.1348 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7083 1.1610 -3.4844 24 1 2.0609 -1.4024 3.8237 25 1 3.7284 -0.9549 3.3911 26 1 3.9080 2.0321 3.7886 27 1 3.8877 2.0424 5.5683 28 1 4.8541 0.8284 4.6963 29 1 1.7599 -0.9714 6.1156 30 1 2.6248 0.4435 6.9232 31 1 1.3532 2.0648 5.4438 32 1 0.4886 0.6499 4.6363 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308155107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -79.373545 kcal Electronic energy + Delta-G solvation = -14253.334897 eV Core-core repulsion = 11793.454230 eV Total energy + Delta-G solvation = -2459.880666 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.68403 -37.74148 -35.41716 -33.22328 -30.15379 -29.09624 -27.92205 -25.29287 -22.39147 -22.01788 -19.88115 -18.64048 -16.79374 -16.51063 -15.56803 -15.22924 -14.93158 -14.31461 -14.00710 -13.07989 -12.70260 -12.51989 -12.14485 -11.89201 -11.66571 -11.43564 -11.19604 -11.04383 -11.01133 -10.81417 -10.35657 -10.26109 -10.17468 -9.75018 -9.49761 -9.30880 -8.87509 -8.46679 -6.16331 -4.23267 3.11861 3.27392 3.30574 3.32922 3.54179 4.12180 4.38720 4.72812 4.86804 5.06038 5.10502 5.16567 5.61560 5.68519 5.74641 5.82998 5.95536 6.00804 6.07428 6.18782 6.25398 6.42274 6.68076 6.91343 6.95381 7.23468 7.62879 7.76504 7.99049 8.18208 8.70471 8.94652 9.42293 10.91092 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.062232 B = 0.006724 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.819146 B = 4162.910240 C = 4275.507950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.361 6.361 13 C 0.450 3.550 14 O -0.514 6.514 15 C -0.081 4.081 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.177 4.177 19 C -0.158 4.158 20 H 0.036 0.964 21 H 0.015 0.985 22 H 0.098 0.902 23 H 0.266 0.734 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -1.981 12.590 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.278 6.278 13 C 0.292 3.708 14 O -0.404 6.404 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.170 4.170 18 C -0.214 4.214 19 C -0.195 4.195 20 H 0.055 0.945 21 H 0.034 0.966 22 H 0.117 0.883 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.544 -1.506 12.373 12.721 hybrid contribution 0.148 -0.305 -0.904 0.965 sum 2.693 -1.811 11.469 11.919 Atomic orbital electron populations 1.22150 0.97693 0.99999 1.01334 1.20580 0.91297 0.93887 0.77928 0.93634 1.21011 1.32479 1.13442 0.89013 0.91418 1.24893 0.94948 0.95102 0.99061 1.69895 1.36065 1.22598 1.24234 0.86331 0.79204 0.79538 0.81034 1.19949 1.21032 1.19993 1.86478 1.75965 1.43833 1.21492 1.23308 0.75192 0.86191 0.86074 1.90581 1.48313 1.16841 1.84656 1.20874 1.03671 0.97736 0.89603 1.21101 0.96443 0.99768 0.94057 1.21306 0.95258 0.98064 1.02387 1.23168 1.04419 1.00245 0.93601 1.22897 0.95201 0.98882 1.02532 0.94531 0.96575 0.88317 0.92375 0.88505 0.87882 0.91217 0.92716 0.92478 0.88866 0.88841 0.88815 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.16 0.35 -3.65 16 2 C 0.22 5.91 2.56 -27.88 -0.07 5.84 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.90 8.90 -34.44 -0.31 -15.21 16 5 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 O -0.36 -8.78 9.86 -39.24 -0.39 -9.17 16 13 C 0.45 9.47 7.79 36.01 0.28 9.75 16 14 O -0.51 -12.08 14.18 -18.75 -0.27 -12.35 16 15 C -0.08 -1.22 5.75 -27.88 -0.16 -1.38 16 16 C -0.11 -1.55 1.59 -154.50 -0.25 -1.80 16 17 C -0.11 -1.46 9.66 37.16 0.36 -1.10 16 18 C -0.18 -1.95 9.87 -26.72 -0.26 -2.22 16 19 C -0.16 -2.15 9.20 -26.73 -0.25 -2.39 16 20 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.10 1.28 7.94 -51.93 -0.41 0.87 16 25 H 0.10 1.37 8.13 -51.93 -0.42 0.95 16 26 H 0.07 1.07 7.60 -51.93 -0.39 0.67 16 27 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 274.19 15.07 4.13 4.13 Total: -1.00 -30.62 274.19 -6.15 -36.77 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.84 Total: -0.10 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.40 Total: -10.53 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.65 Total: -21.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.62 -6.15 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308155107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.604 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds