Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47338 * 2 1 4 4 C 1.50700 * 109.46914 * 240.00003 * 2 1 3 5 5 H 1.08007 * 120.00081 * 239.99916 * 4 2 1 6 6 C 1.37875 * 120.00440 * 60.00650 * 4 2 1 7 7 N 1.31518 * 119.99457 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00568 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46928 * 59.99390 * 8 6 4 10 10 H 1.48500 * 109.47272 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46763 * 299.99382 * 8 6 4 12 12 O 1.45205 * 109.47213 * 120.00289 * 2 1 3 13 13 C 1.34222 * 116.99502 * 270.00098 * 12 2 1 14 14 O 1.20826 * 120.00923 * 359.97438 * 13 12 2 15 15 C 1.50713 * 119.99697 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.46854 * 185.53901 * 15 13 12 17 17 C 1.52999 * 115.55282 * 279.64082 * 16 15 13 18 18 C 1.53010 * 117.49469 * 133.93969 * 16 15 13 19 19 C 1.53004 * 59.99936 * 252.50989 * 18 16 15 20 20 H 1.08996 * 109.47120 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47073 * 300.00366 * 1 2 3 22 22 H 1.08998 * 109.46896 * 59.99957 * 1 2 3 23 23 H 0.96998 * 119.99970 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.46809 * 305.53997 * 15 13 12 25 25 H 1.09000 * 109.46797 * 65.53762 * 15 13 12 26 26 H 1.08999 * 109.46796 * 65.00873 * 17 16 15 27 27 H 1.08997 * 109.47165 * 185.00604 * 17 16 15 28 28 H 1.08995 * 109.47364 * 305.01003 * 17 16 15 29 29 H 1.09002 * 117.49812 * 359.97438 * 18 16 15 30 30 H 1.08995 * 117.49823 * 145.02149 * 18 16 15 31 31 H 1.09004 * 117.49906 * 252.51757 * 19 18 16 32 32 H 1.08998 * 117.50296 * 107.48763 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0078 10 1 1.8260 -0.4205 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 8 2.0140 -0.6846 1.1855 13 6 2.2171 0.0639 2.2810 14 8 1.9982 1.2518 2.2504 15 6 2.7182 -0.5774 3.5495 16 6 2.7317 0.4597 4.6743 17 6 3.9317 1.4089 4.6825 18 6 2.1516 0.0420 6.0272 19 6 1.3845 1.0200 5.1348 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7083 1.1610 -3.4844 24 1 2.0609 -1.4024 3.8237 25 1 3.7284 -0.9549 3.3911 26 1 3.9080 2.0321 3.7886 27 1 3.8877 2.0424 5.5683 28 1 4.8541 0.8284 4.6963 29 1 1.7599 -0.9714 6.1156 30 1 2.6248 0.4435 6.9232 31 1 1.3532 2.0648 5.4438 32 1 0.4886 0.6499 4.6363 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308155107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -96.674165 kcal Electronic energy + Delta-G solvation = -14254.085108 eV Core-core repulsion = 11793.454230 eV Total energy + Delta-G solvation = -2460.630878 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.35566 -39.00521 -37.24282 -35.32227 -31.98033 -30.57978 -29.05463 -27.46625 -23.97975 -23.25839 -21.67900 -19.89939 -18.74050 -18.37976 -17.17140 -17.01247 -16.38873 -15.93247 -15.21317 -14.84771 -14.30371 -13.97419 -13.74282 -13.42910 -13.12516 -12.99586 -12.88604 -12.79809 -12.38940 -12.33924 -12.20382 -12.13715 -11.57579 -11.42620 -11.02133 -10.98957 -10.62603 -10.54431 -8.29411 -6.46879 1.40849 1.43910 1.45698 1.53635 2.02260 2.40703 2.98823 3.02031 3.65107 3.82367 3.97569 4.08083 4.24200 4.53139 4.57621 4.65595 4.76322 4.81180 4.82393 4.94330 4.99272 5.05676 5.08913 5.22417 5.28527 5.38354 5.48085 5.62863 5.93155 6.13438 6.59507 7.04219 7.26626 8.78210 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.062232 B = 0.006724 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.819146 B = 4162.910240 C = 4275.507950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.551 4.551 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.985 3.015 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.268 1.268 12 O -0.370 6.370 13 C 0.441 3.559 14 O -0.545 6.545 15 C -0.071 4.071 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.136 4.136 19 C -0.182 4.182 20 H 0.045 0.955 21 H 0.022 0.978 22 H 0.080 0.920 23 H 0.271 0.729 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 -3.562 13.576 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.193 1.193 12 O -0.287 6.287 13 C 0.286 3.714 14 O -0.435 6.435 15 C -0.109 4.109 16 C -0.135 4.135 17 C -0.168 4.168 18 C -0.173 4.173 19 C -0.219 4.219 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.333 -3.089 13.388 14.139 hybrid contribution -0.104 0.254 -1.136 1.169 sum 3.229 -2.835 12.252 12.984 Atomic orbital electron populations 1.21968 0.96920 1.00288 1.00690 1.20275 0.91908 0.91967 0.79433 0.97737 1.21302 1.33506 1.13951 0.90072 0.91420 1.25872 0.94676 0.95661 1.02250 1.70020 1.36587 1.23740 1.25298 0.85211 0.78805 0.78628 0.76628 1.18747 1.20180 1.19257 1.86475 1.76429 1.44053 1.21717 1.24627 0.74095 0.86067 0.86653 1.90567 1.49535 1.18392 1.85042 1.21056 1.04970 0.98393 0.86435 1.21216 0.96587 1.00235 0.95480 1.21290 0.95962 0.98039 1.01524 1.23265 1.01233 1.00309 0.92497 1.22909 0.94687 0.99788 1.04508 0.93591 0.95925 0.90168 0.91980 0.86070 0.85606 0.94715 0.90918 0.90706 0.87092 0.86510 0.88909 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.22 12.31 2.56 29.85 0.08 12.38 16 3 H 0.00 0.31 7.16 -2.39 -0.02 0.29 16 4 C -0.55 -31.94 8.90 25.60 0.23 -31.71 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.98 43.27 29.54 68.60 2.03 45.29 16 9 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 O -0.37 -18.25 9.86 -51.34 -0.51 -18.76 16 13 C 0.44 18.73 7.79 71.24 0.55 19.28 16 14 O -0.54 -26.50 14.18 21.96 0.31 -26.19 16 15 C -0.07 -2.02 5.75 29.85 0.17 -1.85 16 16 C -0.14 -3.43 1.59 -52.18 -0.08 -3.51 16 17 C -0.11 -2.71 9.66 71.98 0.70 -2.02 16 18 C -0.14 -2.50 9.87 30.60 0.30 -2.20 16 19 C -0.18 -4.73 9.20 30.60 0.28 -4.45 16 20 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 21 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.08 4.55 6.07 -2.39 -0.01 4.53 16 23 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.12 2.86 7.94 -2.39 -0.02 2.84 16 25 H 0.13 3.02 8.13 -2.39 -0.02 3.00 16 26 H 0.03 1.07 7.60 -2.39 -0.02 1.05 16 27 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 1.69 8.08 -2.39 -0.02 1.67 16 30 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.63 274.19 6.50 -61.13 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.08 Total: 11.61 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.35 Total: -19.60 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.24 Total: -53.48 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.20 Total: -44.95 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.63 6.50 -61.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308155107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.547 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds