Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 C 1.53781 * 113.61370 * 277.49817 * 15 13 12 17 17 C 1.53780 * 87.08210 * 220.01447 * 16 15 13 18 18 C 1.53005 * 113.61627 * 139.97734 * 17 16 15 19 19 C 1.53782 * 87.08073 * 25.43630 * 17 16 15 20 20 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 1.08999 * 112.85292 * 48.80461 * 15 13 12 25 25 H 1.08998 * 113.61711 * 334.56763 * 16 15 13 26 26 H 1.09005 * 113.61303 * 105.47202 * 16 15 13 27 27 H 1.09001 * 113.61932 * 270.88364 * 17 16 15 28 28 H 1.09005 * 109.47223 * 322.51330 * 18 17 16 29 29 H 1.09010 * 109.46928 * 82.50292 * 18 17 16 30 30 H 1.08996 * 109.47381 * 202.50502 * 18 17 16 31 31 H 1.09002 * 113.61524 * 220.02193 * 19 17 16 32 32 H 1.08997 * 113.61850 * 89.11160 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 6 4.2435 -0.7703 -3.5811 17 6 4.1872 -0.3495 -5.0592 18 6 5.3432 0.5593 -5.4822 19 6 2.8988 0.4144 -4.7112 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7006 1.1552 3.4844 24 1 2.1577 -1.4712 -3.8219 25 1 4.7858 -0.0684 -2.9476 26 1 4.5557 -1.8041 -3.4331 27 1 4.0296 -1.1823 -5.7446 28 1 5.5816 1.2459 -4.6698 29 1 6.2181 -0.0490 -5.7122 30 1 5.0536 1.1281 -6.3657 31 1 2.1254 0.3371 -5.4754 32 1 3.0734 1.4402 -4.3866 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308157708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = -86.568578 kcal Electronic energy + Delta-G solvation = -14214.153581 eV Core-core repulsion = 11753.960915 eV Total energy + Delta-G solvation = -2460.192667 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06712 -38.07529 -35.48467 -33.22194 -30.28148 -29.37371 -25.59965 -25.33216 -24.72290 -21.34524 -19.67273 -19.05724 -16.95607 -16.52818 -15.67698 -15.32309 -14.76978 -14.49186 -13.53033 -13.18286 -13.02100 -12.38134 -12.28802 -12.13749 -11.67979 -11.30102 -11.18210 -11.04579 -10.84329 -10.72284 -10.44913 -10.32373 -10.26593 -10.16347 -9.51827 -9.38911 -8.86389 -8.47645 -6.16719 -4.23434 3.04234 3.24402 3.31003 3.36186 3.76494 4.35403 4.53467 4.64321 4.86046 4.92814 5.16263 5.39502 5.47962 5.71340 5.74846 5.81876 5.88477 5.95082 6.06288 6.10973 6.27697 6.55783 6.67331 6.91269 6.94908 7.22165 7.62719 7.75895 7.97676 8.17449 8.69342 8.93806 9.42176 10.90834 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.050932 B = 0.006938 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.619997 B = 4035.028081 C = 4315.857360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 H 0.045 0.955 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.356 6.356 13 C 0.460 3.540 14 O -0.523 6.523 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.117 4.117 20 H 0.015 0.985 21 H 0.036 0.964 22 H 0.099 0.901 23 H 0.265 0.735 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -3.007 -12.310 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.160 3.840 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.272 6.272 13 C 0.303 3.697 14 O -0.414 6.414 15 C -0.133 4.133 16 C -0.154 4.154 17 C -0.134 4.134 18 C -0.199 4.199 19 C -0.154 4.154 20 H 0.034 0.966 21 H 0.055 0.945 22 H 0.117 0.883 23 H 0.075 0.925 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.892 -2.545 -12.093 13.291 hybrid contribution 0.050 -0.310 0.959 1.009 sum 4.942 -2.855 -11.135 12.512 Atomic orbital electron populations 1.22155 0.97632 1.00053 1.01369 1.20622 0.91371 0.93918 0.78060 0.93685 1.21079 1.32225 1.13460 0.88939 0.91291 1.24896 0.94951 0.95124 0.99088 1.69911 1.36168 1.22697 1.24017 0.86226 0.78616 0.79513 0.81821 1.19478 1.20754 1.20714 1.86490 1.75569 1.43687 1.21428 1.23226 0.74477 0.85930 0.86090 1.90573 1.48889 1.17080 1.84831 1.22424 0.98384 1.00823 0.91643 1.22936 0.93349 1.02686 0.96412 1.22482 0.95727 0.98844 0.96396 1.21714 0.97474 0.99247 1.01424 1.22986 0.97169 0.99352 0.95885 0.96575 0.94474 0.88258 0.92484 0.86545 0.89469 0.90426 0.89053 0.92371 0.92698 0.92552 0.91051 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.32 37.16 0.35 -3.69 16 2 C 0.21 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.89 8.90 -34.44 -0.31 -15.19 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.70 11.31 55.43 0.63 -25.07 16 8 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 O -0.36 -8.78 9.86 -39.24 -0.39 -9.17 16 13 C 0.46 9.94 7.46 36.00 0.27 10.20 16 14 O -0.52 -12.73 15.12 -18.75 -0.28 -13.02 16 15 C -0.11 -1.76 4.26 -90.96 -0.39 -2.14 16 16 C -0.12 -1.55 7.18 -25.92 -0.19 -1.73 16 17 C -0.12 -1.27 4.36 -89.80 -0.39 -1.66 16 18 C -0.14 -1.38 9.71 37.16 0.36 -1.02 16 19 C -0.12 -1.54 6.97 -25.92 -0.18 -1.72 16 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 23 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.09 1.27 7.91 -51.93 -0.41 0.85 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.62 7.94 -51.93 -0.41 0.20 16 29 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.44 7.39 -51.93 -0.38 1.06 16 LS Contribution 270.89 15.07 4.08 4.08 Total: -1.00 -30.95 270.89 -6.45 -37.40 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.82 Total: -1.00 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.64 Total: -9.52 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.63 Total: -25.07 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.67 Total: -22.18 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.95 -6.45 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308157708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.171 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds