Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47477 * 2 1 4 4 C 1.50706 * 109.47051 * 239.99809 * 2 1 3 5 5 H 1.07993 * 120.00167 * 245.69132 * 4 2 1 6 6 C 1.37881 * 119.99591 * 65.41974 * 4 2 1 7 7 N 1.31510 * 119.99991 * 355.12525 * 6 4 2 8 8 Si 1.86799 * 119.99535 * 175.12739 * 6 4 2 9 9 H 1.48501 * 109.46874 * 94.99973 * 8 6 4 10 10 H 1.48498 * 109.46694 * 214.99209 * 8 6 4 11 11 H 1.48490 * 109.47247 * 334.99805 * 8 6 4 12 12 O 1.45203 * 109.47051 * 120.00542 * 2 1 3 13 13 C 1.34235 * 116.99598 * 269.99618 * 12 2 1 14 14 O 1.20826 * 120.00159 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99910 * 179.97438 * 13 12 2 16 16 H 1.09000 * 115.55250 * 325.67548 * 15 13 12 17 17 C 1.52998 * 117.49738 * 111.37950 * 15 13 12 18 18 C 1.53000 * 60.00273 * 107.49079 * 17 15 13 19 19 C 1.53000 * 117.49836 * 252.51676 * 18 17 15 20 20 C 1.52997 * 117.52042 * 107.48089 * 18 17 15 21 21 H 1.08998 * 109.46964 * 54.94714 * 1 2 3 22 22 H 1.09003 * 109.47395 * 174.94699 * 1 2 3 23 23 H 1.08997 * 109.47268 * 294.94914 * 1 2 3 24 24 H 0.97006 * 119.99967 * 180.02562 * 7 6 4 25 25 H 1.09009 * 117.49907 * 214.97976 * 17 15 13 26 26 H 1.09006 * 117.50051 * 0.02562 * 17 15 13 27 27 H 1.08992 * 109.47583 * 128.62189 * 19 18 17 28 28 H 1.09004 * 109.46625 * 248.61832 * 19 18 17 29 29 H 1.08996 * 109.47307 * 8.61174 * 19 18 17 30 30 H 1.09005 * 109.46809 * 351.37136 * 20 18 17 31 31 H 1.08997 * 109.47141 * 111.37404 * 20 18 17 32 32 H 1.09001 * 109.47313 * 231.37971 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5752 -1.6390 -1.1341 6 6 1.7937 -0.1778 -2.4797 7 7 1.0469 0.8974 -2.6043 8 14 2.5314 -0.9837 -3.9949 9 1 1.5405 -1.9145 -4.5924 10 1 2.8890 0.0619 -4.9869 11 1 3.7506 -1.7388 -3.6100 12 8 2.0139 -0.6846 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9983 1.2518 2.2504 15 6 2.7182 -0.5774 3.5495 16 1 2.3656 -1.5921 3.7344 17 6 4.1362 -0.2278 4.0053 18 6 2.9298 0.3293 4.7637 19 6 2.6163 1.8175 4.5971 20 6 2.6301 -0.2577 6.1444 21 1 -0.3633 0.5902 -0.8413 22 1 -0.3634 -1.0237 -0.0905 23 1 -0.3633 0.4335 0.9317 24 1 0.8788 1.2720 -3.4833 25 1 4.7169 -1.0126 4.4902 26 1 4.7066 0.4664 3.3881 27 1 1.5678 1.9399 4.3256 28 1 2.8117 2.3371 5.5352 29 1 3.2462 2.2359 3.8121 30 1 3.2685 -1.1242 6.3172 31 1 2.8239 0.4946 6.9089 32 1 1.5845 -0.5620 6.1908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308164420.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = -77.222749 kcal Electronic energy + Delta-G solvation = -14292.028156 eV Core-core repulsion = 11832.240756 eV Total energy + Delta-G solvation = -2459.787401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.94432 -37.64819 -35.32290 -33.19146 -29.91887 -29.14801 -27.34751 -25.31619 -24.44369 -21.30181 -19.77597 -18.71355 -16.94301 -16.49884 -15.46860 -14.96696 -14.45354 -14.16813 -13.67056 -13.48795 -12.80172 -12.42420 -12.16695 -12.04191 -11.85255 -11.53384 -11.26238 -11.13129 -11.02503 -10.80092 -10.38659 -10.27417 -10.06232 -9.77080 -9.45051 -9.23410 -8.90218 -8.47021 -6.17894 -4.23478 2.87595 3.25165 3.30845 3.35385 3.60083 3.95695 4.34609 4.73532 4.89568 5.06031 5.14031 5.16122 5.61252 5.67777 5.71191 5.85789 5.93963 6.08204 6.13365 6.15848 6.29263 6.62872 6.70206 6.88774 6.94071 7.22579 7.62547 7.72240 7.94980 8.16571 8.69732 8.94506 9.42079 10.90579 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.057399 B = 0.007011 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.696791 B = 3992.951025 C = 4167.924705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.214 3.786 3 H 0.048 0.952 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 O -0.355 6.355 13 C 0.480 3.520 14 O -0.517 6.517 15 C -0.160 4.160 16 H 0.127 0.873 17 C -0.146 4.146 18 C -0.100 4.100 19 C -0.105 4.105 20 C -0.114 4.114 21 H 0.091 0.909 22 H 0.038 0.962 23 H 0.015 0.985 24 H 0.266 0.734 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -2.140 12.698 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.737 3.263 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.271 6.271 13 C 0.324 3.676 14 O -0.408 6.408 15 C -0.179 4.179 16 H 0.145 0.855 17 C -0.183 4.183 18 C -0.100 4.100 19 C -0.161 4.161 20 C -0.171 4.171 21 H 0.110 0.890 22 H 0.057 0.943 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.208 -1.664 12.480 12.993 hybrid contribution 0.195 -0.382 -1.026 1.112 sum 3.403 -2.046 11.454 12.123 Atomic orbital electron populations 1.22128 0.97672 1.00671 1.00248 1.20633 0.91256 0.94005 0.77918 0.93411 1.21028 1.36686 1.09135 0.89103 0.91320 1.24899 0.94917 0.95119 0.99036 1.69937 1.36726 1.21713 1.24263 0.86277 0.79531 0.78878 0.81566 1.20442 1.20910 1.19563 1.86473 1.75624 1.43771 1.21214 1.22299 0.74721 0.85431 0.85185 1.90587 1.48933 1.16715 1.84520 1.21925 1.02377 1.01287 0.92361 0.85478 1.23236 0.89413 1.03215 1.02448 1.21659 1.01088 0.95718 0.91576 1.21381 1.03357 0.90969 1.00436 1.21379 1.01802 1.00408 0.93522 0.89003 0.94283 0.96552 0.92443 0.87776 0.88149 0.91319 0.93421 0.91552 0.92295 0.91743 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.31 37.15 0.35 -3.53 16 2 C 0.21 5.91 2.50 -27.88 -0.07 5.84 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 4 C -0.52 -14.97 8.83 -34.44 -0.30 -15.27 16 5 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 6 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 7 N -0.89 -25.68 11.59 55.43 0.64 -25.04 16 8 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 O -0.35 -8.80 9.86 -39.27 -0.39 -9.18 16 13 C 0.48 10.40 7.69 36.00 0.28 10.67 16 14 O -0.52 -12.17 12.33 -18.75 -0.23 -12.40 16 15 C -0.16 -2.57 6.02 -91.77 -0.55 -3.13 16 16 H 0.13 1.81 8.14 -51.93 -0.42 1.38 16 17 C -0.15 -1.95 9.53 -26.73 -0.25 -2.20 16 18 C -0.10 -1.35 2.70 -154.51 -0.42 -1.77 16 19 C -0.10 -1.53 8.09 37.16 0.30 -1.23 16 20 C -0.11 -1.16 9.85 37.16 0.37 -0.79 16 21 H 0.09 2.52 6.46 -51.93 -0.34 2.18 16 22 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.10 1.10 8.05 -51.92 -0.42 0.68 16 26 H 0.10 1.43 8.05 -51.93 -0.42 1.01 16 27 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 28 H 0.05 0.57 7.92 -51.93 -0.41 0.16 16 29 H 0.07 1.09 7.02 -51.93 -0.36 0.73 16 30 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 31 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 270.98 15.07 4.08 4.08 Total: -1.00 -30.57 270.98 -6.07 -36.65 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.75 Total: -0.68 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.40 Total: -9.75 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.64 Total: -25.04 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.62 Total: -21.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.57 -6.07 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308164420.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.577 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds