Wall clock time and date at job start Mon Mar 30 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.84922 * 2 1 4 4 C 1.53771 * 113.61625 * 131.20061 * 2 1 3 5 5 C 1.53777 * 87.08220 * 89.11358 * 4 2 1 6 6 C 1.53006 * 113.61489 * 139.98351 * 5 4 2 7 7 C 1.50698 * 109.47184 * 176.53353 * 6 5 4 8 8 O 1.21219 * 119.99902 * 359.97438 * 7 6 5 9 9 O 1.34308 * 120.00263 * 179.97438 * 7 6 5 10 10 C 1.34915 * 117.00399 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99870 * 0.02562 * 10 9 7 12 12 C 1.38758 * 120.00351 * 179.97438 * 10 9 7 13 13 N 1.31438 * 120.00251 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99782 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47080 * 89.99799 * 14 12 10 16 16 H 1.48503 * 109.47030 * 210.00120 * 14 12 10 17 17 H 1.48499 * 109.46960 * 329.99928 * 14 12 10 18 18 C 1.53779 * 87.17120 * 25.39196 * 5 4 2 19 19 H 1.09003 * 109.46962 * 288.80266 * 1 2 3 20 20 H 1.09004 * 109.47046 * 48.79720 * 1 2 3 21 21 H 1.08991 * 109.47184 * 168.80010 * 1 2 3 22 22 H 1.09000 * 109.46978 * 191.19381 * 3 2 1 23 23 H 1.09001 * 109.47256 * 311.20216 * 3 2 1 24 24 H 1.09007 * 109.46902 * 71.19904 * 3 2 1 25 25 H 1.09006 * 113.61359 * 334.56361 * 4 2 1 26 26 H 1.09000 * 113.61519 * 203.66516 * 4 2 1 27 27 H 1.09006 * 113.61610 * 270.79903 * 5 4 2 28 28 H 1.09001 * 109.47002 * 296.52757 * 6 5 4 29 29 H 1.08993 * 109.46955 * 56.53194 * 6 5 4 30 30 H 0.97003 * 120.00333 * 180.02562 * 13 12 10 31 31 H 1.08999 * 113.61559 * 89.15873 * 18 5 4 32 32 H 1.09002 * 113.60988 * 220.05739 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 2.0929 -2.0425 0.0018 6 6 3.3264 -2.9478 0.0026 7 6 3.1398 -4.0519 -1.0060 8 8 2.1210 -4.1093 -1.6603 9 8 4.1024 -4.9723 -1.1799 10 6 3.8719 -5.9337 -2.0980 11 1 2.9461 -5.9385 -2.6541 12 6 4.8247 -6.9157 -2.3285 13 7 4.5999 -7.8526 -3.2225 14 14 6.4263 -6.9070 -1.3672 15 1 6.2632 -7.7062 -0.1263 16 1 7.5058 -7.4979 -2.1984 17 1 6.7833 -5.5098 -1.0127 18 6 2.1448 -0.9316 -1.0603 19 1 -0.3633 0.3312 0.9729 20 1 -0.3633 0.6770 -0.7732 21 1 -0.3633 -1.0080 -0.1996 22 1 3.1942 1.3533 -0.1995 23 1 1.6414 2.0077 -0.7732 24 1 1.9600 1.8734 0.9729 25 1 1.4945 -1.1068 1.9155 26 1 3.1591 -0.6486 1.3494 27 1 1.1574 -2.6019 0.0033 28 1 4.2074 -2.3617 -0.2592 29 1 3.4590 -3.3802 0.9943 30 1 5.2659 -8.5393 -3.3834 31 1 3.1575 -0.6531 -1.3518 32 1 1.4923 -1.1133 -1.9143 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308166626.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:56 Heat of formation + Delta-G solvation = -79.860936 kcal Electronic energy + Delta-G solvation = -14103.350049 eV Core-core repulsion = 11643.448247 eV Total energy + Delta-G solvation = -2459.901801 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.91947 -38.72566 -35.29669 -32.28426 -32.00058 -28.18375 -27.42511 -25.57052 -25.15915 -21.33788 -19.31962 -18.19802 -17.89603 -16.56376 -15.43674 -14.97629 -14.56178 -14.40901 -14.08050 -13.56400 -13.21439 -12.71635 -12.44889 -12.21163 -12.04111 -11.82406 -11.71057 -11.30457 -11.12459 -10.63372 -10.46812 -10.34549 -10.31119 -9.91173 -9.84202 -9.63635 -9.03910 -8.62853 -6.31596 -4.06851 3.19105 3.26835 3.39478 3.49608 4.19767 4.29808 4.54216 4.73328 4.78871 5.03824 5.16805 5.23190 5.50167 5.58699 5.61690 5.72753 5.78235 5.83359 5.88745 5.97272 5.99844 6.03825 6.06974 6.28461 6.33402 6.48712 6.63419 6.74331 7.82005 8.09735 8.70592 9.07873 9.77533 10.77373 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.062802 B = 0.006490 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.736884 B = 4313.027035 C = 4541.622763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.128 4.128 5 C -0.092 4.092 6 C -0.097 4.097 7 C 0.410 3.590 8 O -0.539 6.539 9 O -0.257 6.257 10 C -0.381 4.381 11 H 0.108 0.892 12 C 0.064 3.936 13 N -0.879 5.879 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.261 1.261 18 C -0.124 4.124 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.278 0.722 31 H 0.078 0.922 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 15.027 8.755 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C -0.191 4.191 4 C -0.165 4.165 5 C -0.111 4.111 6 C -0.135 4.135 7 C 0.256 3.744 8 O -0.434 6.434 9 O -0.166 6.166 10 C -0.456 4.456 11 H 0.125 0.875 12 C -0.139 4.139 13 N -0.518 5.518 14 Si 0.731 3.269 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.185 1.185 18 C -0.161 4.161 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.541 14.817 8.474 17.257 hybrid contribution 0.742 -0.270 0.236 0.824 sum -1.799 14.547 8.710 17.050 Atomic orbital electron populations 1.21591 0.93397 1.02233 1.01299 1.21803 0.95493 0.94200 0.97731 1.21719 1.00490 0.95646 1.01233 1.23124 1.00945 0.95952 0.96482 1.22291 0.98452 0.93818 0.96513 1.21177 0.99578 0.94438 0.98263 1.23091 0.82727 0.83705 0.84916 1.90581 1.29556 1.75191 1.48055 1.83531 1.43523 1.35288 1.54305 1.20644 1.06681 1.02871 1.15441 0.87452 1.24546 0.98824 0.94292 0.96245 1.69611 1.36097 1.13936 1.32198 0.86218 0.81733 0.79327 0.79647 1.19935 1.20841 1.18477 1.23138 1.00959 0.95101 0.96896 0.92724 0.92627 0.92054 0.92606 0.92859 0.92889 0.91580 0.90077 0.88280 0.89148 0.89048 0.91159 0.90329 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.07 37.16 0.34 -1.03 16 2 C -0.09 -1.05 1.39 -153.61 -0.21 -1.26 16 3 C -0.13 -1.30 9.20 37.16 0.34 -0.95 16 4 C -0.13 -1.47 6.79 -25.93 -0.18 -1.64 16 5 C -0.09 -1.38 2.76 -89.81 -0.25 -1.62 16 6 C -0.10 -1.63 5.64 -27.88 -0.16 -1.79 16 7 C 0.41 9.77 7.91 36.00 0.28 10.05 16 8 O -0.54 -14.42 15.03 -19.06 -0.29 -14.70 16 9 O -0.26 -6.97 8.58 -20.68 -0.18 -7.15 16 10 C -0.38 -11.61 10.10 30.92 0.31 -11.29 16 11 H 0.11 3.60 7.09 -52.49 -0.37 3.23 16 12 C 0.06 1.87 5.49 -17.53 -0.10 1.78 16 13 N -0.88 -26.58 13.96 55.48 0.77 -25.81 16 14 Si 0.91 21.84 28.62 -169.99 -4.86 16.98 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.12 -1.74 6.76 -25.83 -0.17 -1.91 16 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.72 7.34 -51.93 -0.38 0.34 16 22 H 0.05 0.53 7.96 -51.93 -0.41 0.12 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 27 H 0.10 1.64 7.25 -51.93 -0.38 1.27 16 28 H 0.09 1.36 7.88 -51.93 -0.41 0.96 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.28 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 32 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -32.54 271.14 -5.12 -37.66 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.86 Total: -1.39 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 0.21 Total: -9.68 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.77 Total: -25.81 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.46 Total: -21.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.54 -5.12 -37.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308166626.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.196 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds