Wall clock time and date at job start Mon Mar 30 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00143 * 2 1 4 4 H 1.48502 * 109.46934 * 270.00109 * 3 2 1 5 5 H 1.48500 * 109.47036 * 29.99699 * 3 2 1 6 6 H 1.48495 * 109.47317 * 150.00132 * 3 2 1 7 7 C 1.38815 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99647 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00399 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00178 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46971 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46964 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47601 * 180.02562 * 12 11 10 14 14 C 1.46768 * 124.34879 * 89.99607 * 13 12 11 15 15 C 1.54480 * 105.55098 * 197.08340 * 14 13 12 16 16 C 1.54631 * 101.76472 * 334.54015 * 15 14 13 17 17 C 1.34621 * 124.47196 * 270.02849 * 13 12 11 18 18 O 1.21286 * 124.90539 * 359.55259 * 17 13 12 19 19 H 0.96996 * 119.99939 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99719 * 359.97438 * 9 7 2 21 21 H 1.09001 * 109.46700 * 60.00273 * 10 9 7 22 22 H 1.08992 * 109.47268 * 300.00436 * 10 9 7 23 23 H 1.08994 * 109.47345 * 60.00612 * 11 10 9 24 24 H 1.08998 * 109.47760 * 300.00018 * 11 10 9 25 25 H 1.09002 * 109.47341 * 60.00167 * 12 11 10 26 26 H 1.08998 * 109.47560 * 300.00047 * 12 11 10 27 27 H 1.09002 * 110.24468 * 78.03845 * 14 13 12 28 28 H 1.09002 * 110.24463 * 316.12602 * 14 13 12 29 29 H 1.08995 * 110.97082 * 92.66028 * 15 14 13 30 30 H 1.09001 * 110.96924 * 216.42557 * 15 14 13 31 31 H 1.09000 * 110.48694 * 143.47575 * 16 15 14 32 32 H 1.08994 * 110.49106 * 266.12244 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 6 6.3814 -3.5162 -0.0007 13 7 7.8217 -3.2486 0.0000 14 6 8.6355 -3.0980 1.2121 15 6 9.9403 -2.4106 0.7522 16 6 10.0100 -2.8293 -0.7348 17 6 8.5711 -3.1081 -1.1095 18 8 8.1528 -3.1924 -2.2448 19 1 -0.4850 0.8400 -0.0004 20 1 3.8646 -0.3620 0.0004 21 1 3.8492 -3.0422 -0.8903 22 1 3.8485 -3.0426 0.8896 23 1 5.8797 -1.6197 0.8900 24 1 5.8798 -1.6196 -0.8899 25 1 6.1181 -4.0874 -0.8909 26 1 6.1182 -4.0882 0.8891 27 1 8.8553 -4.0750 1.6425 28 1 8.1166 -2.4739 1.9396 29 1 9.8658 -1.3276 0.8493 30 1 10.7983 -2.7924 1.3055 31 1 10.4118 -2.0176 -1.3412 32 1 10.6152 -3.7285 -0.8500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308191465.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:55 Heat of formation + Delta-G solvation = -27.406188 kcal Electronic energy + Delta-G solvation = -13836.895557 eV Core-core repulsion = 11411.561115 eV Total energy + Delta-G solvation = -2425.334442 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.38241 -36.54201 -35.66477 -33.51185 -31.53263 -29.60712 -27.71325 -25.50990 -22.59041 -22.01367 -21.07500 -19.37091 -17.54579 -16.79326 -16.60135 -15.54848 -14.58668 -14.43030 -14.03786 -13.89623 -13.61391 -13.35328 -12.76893 -12.74326 -12.19427 -12.12907 -11.68880 -11.30980 -11.16377 -10.93391 -10.80148 -10.53707 -10.12823 -9.80246 -9.57476 -8.87434 -8.74626 -7.21146 -5.74797 -3.10170 2.53620 2.95560 3.39076 3.42784 3.46657 4.17967 4.24779 4.56064 4.61402 4.82231 5.06898 5.11645 5.25635 5.31396 5.43997 5.52582 5.55525 5.56295 5.70764 5.80937 5.90634 5.98264 6.24283 6.51101 6.74511 6.76494 7.08976 8.01533 8.13239 8.44468 9.23448 9.96020 10.16134 11.43743 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047869 B = 0.005911 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.795407 B = 4735.755607 C = 4871.429890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.145 4.145 12 C 0.129 3.871 13 N -0.619 5.619 14 C 0.100 3.900 15 C -0.132 4.132 16 C -0.155 4.155 17 C 0.512 3.488 18 O -0.531 6.531 19 H 0.259 0.741 20 H 0.360 0.640 21 H 0.029 0.971 22 H 0.027 0.973 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.999 -6.247 4.049 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.184 4.184 12 C 0.008 3.992 13 N -0.354 5.354 14 C -0.024 4.024 15 C -0.170 4.170 16 C -0.195 4.195 17 C 0.299 3.701 18 O -0.407 6.407 19 H 0.069 0.931 20 H 0.193 0.807 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 21.449 -6.405 3.453 22.649 hybrid contribution 0.488 1.280 0.125 1.376 sum 21.936 -5.125 3.578 22.810 Atomic orbital electron populations 1.69700 1.05088 1.25816 1.57694 1.24670 0.95250 0.97212 1.02057 0.86528 0.79127 0.84933 0.77835 1.21036 1.21675 1.20434 1.19081 0.80619 0.94811 1.42919 0.89162 1.42701 1.04085 1.02244 1.91209 1.20522 0.88046 0.89488 0.98715 1.22141 0.96622 0.97244 1.02387 1.21384 0.76990 0.97519 1.03350 1.48421 1.08687 1.71214 1.07031 1.22087 0.91528 1.00868 0.87880 1.22599 0.97573 1.01728 0.95130 1.22329 0.95284 1.04196 0.97738 1.20992 0.88676 0.75870 0.84529 1.90744 1.77841 1.51063 1.21083 0.93059 0.80704 0.95315 0.95463 0.91909 0.91664 0.89772 0.90132 0.91088 0.90164 0.89940 0.89239 0.88176 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.04 13.97 55.49 0.78 -29.26 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.77 27.74 -169.99 -4.71 18.05 16 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 7 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.76 -18.92 5.41 -59.91 -0.32 -19.24 16 10 C 0.16 3.20 6.26 -4.04 -0.03 3.18 16 11 C -0.14 -2.34 5.65 -26.73 -0.15 -2.49 16 12 C 0.13 1.71 5.94 -4.04 -0.02 1.69 16 13 N -0.62 -7.39 2.94 -172.35 -0.51 -7.90 16 14 C 0.10 0.78 7.34 -3.12 -0.02 0.76 16 15 C -0.13 -0.82 7.18 -25.10 -0.18 -1.00 16 16 C -0.16 -1.30 6.86 -26.74 -0.18 -1.48 16 17 C 0.51 6.89 8.03 -10.77 -0.09 6.80 16 18 O -0.53 -9.65 17.60 5.55 0.10 -9.56 16 19 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 20 H 0.36 8.81 5.53 -40.82 -0.23 8.59 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.08 1.21 7.93 -51.93 -0.41 0.79 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -35.41 271.02 -6.39 -41.80 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.88 Total: 1.89 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.93 Total: 0.12 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.06 Total: -56.40 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.10 Total: -9.56 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.41 -6.39 -41.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308191465.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.394 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds