Wall clock time and date at job start Mon Mar 30 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00143 * 2 1 4 4 H 1.48502 * 109.46934 * 270.00109 * 3 2 1 5 5 H 1.48500 * 109.47036 * 29.99699 * 3 2 1 6 6 H 1.48495 * 109.47317 * 150.00132 * 3 2 1 7 7 C 1.38815 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99647 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00399 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00178 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46971 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46964 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47601 * 180.02562 * 12 11 10 14 14 C 1.46768 * 124.34879 * 89.99607 * 13 12 11 15 15 C 1.54480 * 105.55098 * 197.08340 * 14 13 12 16 16 C 1.54631 * 101.76472 * 334.54015 * 15 14 13 17 17 C 1.34621 * 124.47196 * 270.02849 * 13 12 11 18 18 O 1.21286 * 124.90539 * 359.55259 * 17 13 12 19 19 H 0.96996 * 119.99939 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99719 * 359.97438 * 9 7 2 21 21 H 1.09001 * 109.46700 * 60.00273 * 10 9 7 22 22 H 1.08992 * 109.47268 * 300.00436 * 10 9 7 23 23 H 1.08994 * 109.47345 * 60.00612 * 11 10 9 24 24 H 1.08998 * 109.47760 * 300.00018 * 11 10 9 25 25 H 1.09002 * 109.47341 * 60.00167 * 12 11 10 26 26 H 1.08998 * 109.47560 * 300.00047 * 12 11 10 27 27 H 1.09002 * 110.24468 * 78.03845 * 14 13 12 28 28 H 1.09002 * 110.24463 * 316.12602 * 14 13 12 29 29 H 1.08995 * 110.97082 * 92.66028 * 15 14 13 30 30 H 1.09001 * 110.96924 * 216.42557 * 15 14 13 31 31 H 1.09000 * 110.48694 * 143.47575 * 16 15 14 32 32 H 1.08994 * 110.49106 * 266.12244 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 6 6.3814 -3.5162 -0.0007 13 7 7.8217 -3.2486 0.0000 14 6 8.6355 -3.0980 1.2121 15 6 9.9403 -2.4106 0.7522 16 6 10.0100 -2.8293 -0.7348 17 6 8.5711 -3.1081 -1.1095 18 8 8.1528 -3.1924 -2.2448 19 1 -0.4850 0.8400 -0.0004 20 1 3.8646 -0.3620 0.0004 21 1 3.8492 -3.0422 -0.8903 22 1 3.8485 -3.0426 0.8896 23 1 5.8797 -1.6197 0.8900 24 1 5.8798 -1.6196 -0.8899 25 1 6.1181 -4.0874 -0.8909 26 1 6.1182 -4.0882 0.8891 27 1 8.8553 -4.0750 1.6425 28 1 8.1166 -2.4739 1.9396 29 1 9.8658 -1.3276 0.8493 30 1 10.7983 -2.7924 1.3055 31 1 10.4118 -2.0176 -1.3412 32 1 10.6152 -3.7285 -0.8500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308191465.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:55 Heat of formation + Delta-G solvation = -53.126171 kcal Electronic energy + Delta-G solvation = -13838.010859 eV Core-core repulsion = 11411.561115 eV Total energy + Delta-G solvation = -2426.449744 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29156 -37.74287 -37.18142 -34.98270 -33.35184 -31.07304 -28.42385 -27.06824 -24.31621 -22.77911 -22.63479 -20.34700 -19.69304 -17.75737 -17.44529 -16.61892 -16.51760 -15.78680 -15.73463 -14.96109 -14.71822 -14.56319 -14.31954 -13.72957 -13.63415 -13.32379 -12.88873 -12.81516 -12.47490 -12.27669 -12.06711 -11.92328 -11.83987 -11.79224 -11.02499 -10.83418 -9.70949 -9.35831 -8.07044 -5.41567 1.33934 1.38525 1.45495 1.54737 2.07023 2.44791 3.24202 3.45722 3.56189 3.67429 3.98759 4.08661 4.16421 4.28103 4.35643 4.52481 4.63123 4.70166 4.76179 4.83813 4.90914 5.11132 5.20529 5.21392 5.25618 5.60186 5.70709 6.17038 6.18508 7.02648 7.15112 7.78368 7.97671 9.14474 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047869 B = 0.005911 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.795407 B = 4735.755607 C = 4871.429890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.063 4.063 3 Si 0.957 3.043 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.251 1.251 7 C -0.242 4.242 8 H 0.058 0.942 9 N -0.761 5.761 10 C 0.156 3.844 11 C -0.127 4.127 12 C 0.133 3.867 13 N -0.621 5.621 14 C 0.091 3.909 15 C -0.120 4.120 16 C -0.147 4.147 17 C 0.494 3.506 18 O -0.593 6.593 19 H 0.260 0.740 20 H 0.365 0.635 21 H 0.018 0.982 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.031 -5.771 5.676 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.175 1.175 7 C -0.373 4.373 8 H 0.076 0.924 9 N -0.407 5.407 10 C 0.029 3.971 11 C -0.166 4.166 12 C 0.010 3.990 13 N -0.353 5.353 14 C -0.030 4.030 15 C -0.158 4.158 16 C -0.187 4.187 17 C 0.284 3.716 18 O -0.474 6.474 19 H 0.068 0.932 20 H 0.198 0.802 21 H 0.036 0.964 22 H 0.057 0.943 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.127 0.873 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 24.543 -5.957 5.129 25.772 hybrid contribution -0.489 1.013 -0.371 1.185 sum 24.054 -4.943 4.759 25.014 Atomic orbital electron populations 1.69879 1.07118 1.26869 1.59405 1.25539 0.96189 1.01370 1.02324 0.85377 0.78724 0.79458 0.78043 1.20781 1.21574 1.17540 1.19076 0.82652 0.93703 1.41851 0.92446 1.42737 1.02656 1.04228 1.91108 1.20693 0.90244 0.87545 0.98576 1.21943 0.93972 0.98792 1.01907 1.21231 0.78075 0.95816 1.03879 1.48595 1.08178 1.70110 1.08430 1.22443 0.91693 1.02642 0.86246 1.22655 0.97846 1.01847 0.93430 1.22370 0.91646 1.05338 0.99354 1.22007 0.90973 0.74760 0.83900 1.90702 1.79368 1.53826 1.23535 0.93151 0.80191 0.96352 0.94286 0.90512 0.93821 0.91650 0.87287 0.88780 0.89414 0.89794 0.85839 0.87776 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.39 13.97 21.65 0.30 -64.09 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.96 46.72 27.74 68.60 1.90 48.63 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 7 C -0.24 -14.42 10.47 84.03 0.88 -13.54 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 9 N -0.76 -37.58 5.41 -343.46 -1.86 -39.44 16 10 C 0.16 6.15 6.26 86.38 0.54 6.69 16 11 C -0.13 -3.94 5.65 30.59 0.17 -3.77 16 12 C 0.13 3.32 5.94 86.38 0.51 3.83 16 13 N -0.62 -13.52 2.94 -817.66 -2.40 -15.92 16 14 C 0.09 1.07 7.34 86.83 0.64 1.71 16 15 C -0.12 -0.97 7.18 31.65 0.23 -0.74 16 16 C -0.15 -2.04 6.86 30.59 0.21 -1.83 16 17 C 0.49 12.79 8.03 87.87 0.71 13.50 16 18 O -0.59 -22.07 17.60 -3.05 -0.05 -22.12 16 19 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 20 H 0.37 17.19 5.53 -92.71 -0.51 16.67 16 21 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.88 7.93 -2.39 -0.02 1.87 16 26 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -79.11 271.02 2.77 -76.34 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.52 Total: 14.08 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 4.35 Total: 2.52 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -3.96 Total: -119.45 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.63 kcal Total: -79.11 2.77 -76.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308191465.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.217 kcal (2) G-P(sol) polarization free energy of solvation -79.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds