Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 C 1.50698 * 109.47524 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99534 * 0.02562 * 4 3 2 6 6 O 1.34230 * 120.00276 * 179.97438 * 4 3 2 7 7 C 1.45198 * 116.99995 * 184.35054 * 6 4 3 8 8 C 1.50697 * 112.85075 * 294.78240 * 7 6 4 9 9 H 1.07996 * 120.00460 * 124.37004 * 8 7 6 10 10 C 1.37877 * 120.00034 * 304.64375 * 8 7 6 11 11 N 1.31514 * 120.00456 * 185.67263 * 10 8 7 12 12 Si 1.86803 * 119.99826 * 5.66997 * 10 8 7 13 13 H 1.48500 * 109.47122 * 84.88081 * 12 10 8 14 14 H 1.48505 * 109.47211 * 204.88076 * 12 10 8 15 15 H 1.48505 * 109.46971 * 324.88091 * 12 10 8 16 16 C 1.53778 * 113.61233 * 65.97593 * 7 6 4 17 17 C 1.53955 * 87.01979 * 89.23077 * 16 7 6 18 18 C 1.53777 * 87.11072 * 25.36097 * 17 16 7 19 19 H 1.09000 * 109.47001 * 300.00114 * 1 2 3 20 20 H 1.08999 * 109.47182 * 59.99463 * 1 2 3 21 21 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47107 * 240.00406 * 2 1 3 23 23 H 1.08993 * 109.47338 * 120.00108 * 2 1 3 24 24 H 1.09000 * 109.47179 * 59.99995 * 3 2 1 25 25 H 1.09007 * 109.47129 * 300.00507 * 3 2 1 26 26 H 0.97003 * 120.00086 * 179.97438 * 11 10 8 27 27 H 1.09002 * 113.61715 * 203.74894 * 16 7 6 28 28 H 1.09002 * 113.62053 * 334.64937 * 16 7 6 29 29 H 1.09002 * 113.53645 * 270.80796 * 17 16 7 30 30 H 1.08995 * 113.74545 * 139.94809 * 17 16 7 31 31 H 1.09000 * 113.61296 * 220.09453 * 18 17 16 32 32 H 1.08998 * 113.69248 * 89.20167 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1511 0.3961 -0.0015 6 8 4.2182 2.6050 -0.0013 7 6 5.6649 2.5309 -0.1000 8 6 6.3002 1.8726 1.0975 9 1 6.9461 1.0173 0.9644 10 6 6.0524 2.3587 2.3637 11 7 6.6921 1.8571 3.3976 12 14 4.8081 3.7299 2.6108 13 1 3.4459 3.1486 2.7191 14 1 5.1301 4.4721 3.8562 15 1 4.8593 4.6592 1.4535 16 6 6.1628 1.9753 -1.4447 17 6 6.1511 3.4270 -1.9572 18 6 6.3246 3.8632 -0.4928 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6767 1.9564 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 6.5180 2.1994 4.2884 27 1 7.1601 1.5382 -1.3942 28 1 5.4412 1.3290 -1.9444 29 1 5.1979 3.7273 -2.3923 30 1 7.0025 3.6757 -2.5907 31 1 5.7333 4.7388 -0.2251 32 1 7.3657 3.9438 -0.1803 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308245859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = -94.096357 kcal Electronic energy + Delta-G solvation = -14890.380156 eV Core-core repulsion = 12429.861061 eV Total energy + Delta-G solvation = -2460.519095 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.53713 -39.12396 -36.22821 -35.32491 -34.57602 -29.54363 -28.63963 -26.61359 -24.49856 -23.21577 -21.49184 -20.06369 -19.29155 -17.65958 -17.52003 -16.93811 -16.59041 -15.90282 -15.29111 -14.96143 -14.68516 -14.05089 -13.79910 -13.29366 -13.22619 -13.05551 -12.92572 -12.69124 -12.16411 -12.07299 -12.00927 -11.88103 -11.68159 -11.66018 -11.19599 -11.00845 -10.59266 -10.43052 -8.39639 -6.48906 1.29687 1.32307 1.42283 1.61607 2.06698 2.32219 2.99490 3.72796 3.85249 3.92088 4.03153 4.05642 4.18758 4.41306 4.58677 4.64987 4.65594 4.81794 4.91334 4.95334 5.06560 5.10504 5.17726 5.23490 5.29807 5.43197 5.52552 5.59282 5.85259 6.31214 6.55915 7.11602 7.24642 8.75784 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.013718 C = 0.011001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.345009 B = 2040.643664 C = 2544.700419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.113 4.113 4 C 0.441 3.559 5 O -0.531 6.531 6 O -0.360 6.360 7 C 0.172 3.828 8 C -0.516 4.516 9 H 0.028 0.972 10 C 0.021 3.979 11 N -0.939 5.939 12 Si 0.942 3.058 13 H -0.276 1.276 14 H -0.298 1.298 15 H -0.218 1.218 16 C -0.144 4.144 17 C -0.117 4.117 18 C -0.122 4.122 19 H 0.061 0.939 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.105 0.895 25 H 0.134 0.866 26 H 0.267 0.733 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.522 4.399 -9.589 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.150 4.150 4 C 0.285 3.715 5 O -0.419 6.419 6 O -0.279 6.279 7 C 0.137 3.863 8 C -0.553 4.553 9 H 0.046 0.954 10 C -0.178 4.178 11 N -0.579 5.579 12 Si 0.767 3.233 13 H -0.202 1.202 14 H -0.226 1.226 15 H -0.141 1.141 16 C -0.181 4.181 17 C -0.154 4.154 18 C -0.159 4.159 19 H 0.080 0.920 20 H 0.093 0.907 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.152 0.848 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.264 4.104 -9.424 15.249 hybrid contribution 0.218 -0.258 0.955 1.013 sum -11.046 3.846 -8.469 14.440 Atomic orbital electron populations 1.21727 0.92252 1.02886 1.03041 1.21344 0.97784 0.93655 1.02213 1.21668 0.85188 1.01161 1.06997 1.24432 0.92890 0.81956 0.72259 1.90608 1.71767 1.34212 1.45362 1.86293 1.24055 1.35127 1.82383 1.21322 0.74277 0.96795 0.93861 1.21200 1.28141 1.14594 0.91382 0.95392 1.25924 0.97208 0.99277 0.95374 1.70082 1.43074 1.44802 0.99905 0.85865 0.78879 0.80232 0.78354 1.20179 1.22603 1.14057 1.23285 1.00845 0.97630 0.96379 1.22851 1.03097 0.93937 0.95542 1.23246 1.00632 0.95695 0.96351 0.92007 0.90714 0.91514 0.91832 0.93723 0.87644 0.84830 0.92410 0.90822 0.92917 0.88952 0.89135 0.90728 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.11 -3.10 5.22 30.59 0.16 -2.94 16 3 C -0.11 -3.35 5.81 29.85 0.17 -3.18 16 4 C 0.44 19.07 7.31 71.24 0.52 19.59 16 5 O -0.53 -27.31 14.11 21.96 0.31 -27.00 16 6 O -0.36 -16.20 7.27 -51.42 -0.37 -16.57 16 7 C 0.17 8.26 0.11 -11.02 0.00 8.26 16 8 C -0.52 -30.93 7.92 25.60 0.20 -30.73 16 9 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 10 C 0.02 1.28 5.47 84.65 0.46 1.74 16 11 N -0.94 -60.74 13.96 21.45 0.30 -60.44 16 12 Si 0.94 45.90 25.54 68.60 1.75 47.66 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 15 H -0.22 -9.44 5.15 99.48 0.51 -8.92 16 16 C -0.14 -6.02 6.91 31.18 0.22 -5.80 16 17 C -0.12 -3.82 8.03 31.18 0.25 -3.57 16 18 C -0.12 -4.84 6.50 31.12 0.20 -4.64 16 19 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 23 H 0.04 1.45 8.10 -2.39 -0.02 1.44 16 24 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 25 H 0.13 2.95 8.14 -2.38 -0.02 2.93 16 26 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 27 H 0.07 3.20 8.09 -2.39 -0.02 3.18 16 28 H 0.05 2.20 7.35 -2.39 -0.02 2.18 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.07 2.78 6.60 -2.39 -0.02 2.77 16 32 H 0.09 3.61 8.09 -2.39 -0.02 3.59 16 Total: -1.00 -73.90 263.13 5.77 -68.12 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.89 Total: 11.44 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 2.90 Total: -23.21 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.30 Total: -60.44 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.06 Total: -43.57 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.75 Total: 47.66 kcal Total: -73.90 5.77 -68.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308245859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.973 kcal (2) G-P(sol) polarization free energy of solvation -73.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds