Wall clock time and date at job start Mon Mar 30 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 115.56089 * 2 1 4 4 O 1.45195 * 109.47056 * 34.30394 * 3 2 1 5 5 C 1.34235 * 116.99689 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00254 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99948 * 180.02562 * 5 4 3 8 8 C 1.52997 * 109.47533 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47533 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00087 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99961 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99920 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99775 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46842 * 90.00128 * 13 11 9 15 15 H 1.48492 * 109.47232 * 209.99901 * 13 11 9 16 16 H 1.48494 * 109.47279 * 330.00498 * 13 11 9 17 17 C 1.53000 * 117.50223 * 214.30865 * 2 1 3 18 18 C 1.52997 * 117.49889 * 145.68126 * 2 1 3 19 19 H 1.08996 * 109.47111 * 205.68891 * 1 2 3 20 20 H 1.09000 * 109.47300 * 325.69419 * 1 2 3 21 21 H 1.09004 * 109.46610 * 85.68977 * 1 2 3 22 22 H 1.08994 * 109.47047 * 154.31069 * 3 2 1 23 23 H 1.09000 * 109.46919 * 274.30794 * 3 2 1 24 24 H 1.09002 * 109.47485 * 300.00902 * 7 5 4 25 25 H 1.09004 * 109.47060 * 60.00250 * 7 5 4 26 26 H 1.08995 * 109.47021 * 300.00749 * 8 7 5 27 27 H 1.09004 * 109.46840 * 59.99997 * 8 7 5 28 28 H 0.96999 * 119.99536 * 179.97438 * 12 11 9 29 29 H 1.08990 * 117.49990 * 145.01974 * 17 2 1 30 30 H 1.09004 * 117.49237 * 359.97438 * 17 2 1 31 31 H 1.08999 * 117.49685 * 0.02562 * 18 2 1 32 32 H 1.08997 * 117.50044 * 214.98097 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 8 1.3789 2.3048 0.7715 5 6 1.8223 3.5679 0.8710 6 8 2.8539 3.8904 0.3310 7 6 1.0334 4.5837 1.6563 8 6 1.7522 5.9336 1.6112 9 6 0.9630 6.9496 2.3960 10 1 0.0412 6.6613 2.8791 11 6 1.4179 8.2472 2.4972 12 7 2.5403 8.5984 1.9085 13 14 0.4393 9.5068 3.4694 14 1 0.8918 9.5007 4.8838 15 1 0.6526 10.8561 2.8873 16 1 -1.0045 9.1647 3.4103 17 6 2.2365 -1.1210 -0.7649 18 6 2.2364 -1.1209 0.7651 19 1 -0.3633 -0.9261 0.4455 20 1 -0.3634 0.8489 0.5792 21 1 -0.3633 0.0772 -1.0248 22 1 3.1823 1.3085 0.4455 23 1 2.2773 1.7414 -1.0248 24 1 0.0393 4.6871 1.2214 25 1 0.9445 4.2535 2.6914 26 1 2.7464 5.8305 2.0459 27 1 1.8408 6.2635 0.5760 28 1 2.8601 9.5115 1.9794 29 1 3.1715 -0.8752 -1.2682 30 1 1.6112 -1.8587 -1.2678 31 1 1.6112 -1.8585 1.2681 32 1 3.1715 -0.8750 1.2684 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308291004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:14 Heat of formation + Delta-G solvation = -84.107357 kcal Electronic energy + Delta-G solvation = -13668.618536 eV Core-core repulsion = 11208.532596 eV Total energy + Delta-G solvation = -2460.085940 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00547 -38.16146 -35.76880 -33.56807 -31.15840 -28.90253 -27.42049 -25.61130 -22.66085 -22.13233 -19.75397 -19.30759 -17.29520 -16.38455 -16.16216 -15.80759 -14.72340 -14.43857 -14.23843 -13.75505 -13.09535 -12.60360 -12.36250 -12.27627 -12.23395 -11.64199 -11.30906 -11.10100 -10.95429 -10.65662 -10.59319 -10.39727 -10.04126 -9.89752 -9.73853 -9.51988 -9.16748 -8.36989 -6.00814 -4.05683 2.85969 3.03972 3.32253 3.38455 3.41471 3.61170 4.44233 4.52989 4.63525 4.74144 4.90221 5.34640 5.37148 5.42464 5.43842 5.57116 5.68341 5.76016 5.84090 5.91959 5.95162 6.14073 6.20106 6.28090 6.68256 6.98312 7.67431 7.74555 7.98975 8.27597 8.44144 9.01538 9.58366 11.10274 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.077769 B = 0.005058 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.952949 B = 5533.948520 C = 5751.520450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.128 4.128 3 C 0.102 3.898 4 O -0.361 6.361 5 C 0.456 3.544 6 O -0.508 6.508 7 C -0.103 4.103 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.170 4.170 18 C -0.172 4.172 19 H 0.055 0.945 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.262 0.738 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -17.350 -3.083 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.128 4.128 3 C 0.028 3.972 4 O -0.279 6.279 5 C 0.299 3.701 6 O -0.394 6.394 7 C -0.140 4.140 8 C -0.005 4.005 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.207 4.207 18 C -0.209 4.209 19 H 0.074 0.926 20 H 0.096 0.904 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.732 -17.121 -3.299 17.649 hybrid contribution -0.211 0.672 0.390 0.805 sum -2.942 -16.449 -2.909 16.961 Atomic orbital electron populations 1.21266 0.91073 1.02645 1.02079 1.21417 0.96045 0.89321 1.06050 1.22314 0.93047 0.86125 0.95745 1.86530 1.52311 1.21457 1.67607 1.24776 0.85115 0.81338 0.78825 1.90631 1.24576 1.79649 1.44586 1.21754 0.99718 0.93813 0.98758 1.19018 0.95773 0.87229 0.98445 1.21162 1.08213 0.94512 1.32762 0.92300 1.25023 0.95078 0.98523 0.95695 1.69997 1.20855 1.18654 1.43326 0.86538 0.80356 0.80687 0.80077 1.20604 1.21190 1.19782 1.23065 1.02418 1.00441 0.94739 1.23222 1.02521 1.00977 0.94208 0.92609 0.90431 0.92379 0.91423 0.91150 0.88978 0.88983 0.95619 0.95596 0.92855 0.88600 0.88290 0.88490 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.75 37.16 0.36 -0.84 16 2 C -0.13 -1.45 2.59 -154.51 -0.40 -1.85 16 3 C 0.10 1.45 5.59 37.16 0.21 1.66 16 4 O -0.36 -6.10 8.79 -39.27 -0.35 -6.44 16 5 C 0.46 9.18 7.96 36.00 0.29 9.47 16 6 O -0.51 -11.84 15.73 -18.75 -0.29 -12.13 16 7 C -0.10 -2.13 5.75 -27.89 -0.16 -2.29 16 8 C 0.03 0.87 4.26 -27.89 -0.12 0.75 16 9 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 13 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 17 C -0.17 -1.53 9.97 -26.73 -0.27 -1.80 16 18 C -0.17 -1.66 9.82 -26.73 -0.26 -1.92 16 19 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 20 H 0.08 0.93 6.87 -51.93 -0.36 0.58 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 23 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 24 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 25 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 32 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 LS Contribution 278.78 15.07 4.20 4.20 Total: -1.00 -31.71 278.78 -6.42 -38.13 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.93 Total: -3.39 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.76 Total: -10.40 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.64 Total: -18.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.71 -6.42 -38.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308291004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.978 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds