Wall clock time and date at job start Mon Mar 30 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 115.56089 * 2 1 4 4 O 1.45195 * 109.47056 * 34.30394 * 3 2 1 5 5 C 1.34235 * 116.99689 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00254 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99948 * 180.02562 * 5 4 3 8 8 C 1.52997 * 109.47533 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47533 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00087 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99961 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99920 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99775 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46842 * 90.00128 * 13 11 9 15 15 H 1.48492 * 109.47232 * 209.99901 * 13 11 9 16 16 H 1.48494 * 109.47279 * 330.00498 * 13 11 9 17 17 C 1.53000 * 117.50223 * 214.30865 * 2 1 3 18 18 C 1.52997 * 117.49889 * 145.68126 * 2 1 3 19 19 H 1.08996 * 109.47111 * 205.68891 * 1 2 3 20 20 H 1.09000 * 109.47300 * 325.69419 * 1 2 3 21 21 H 1.09004 * 109.46610 * 85.68977 * 1 2 3 22 22 H 1.08994 * 109.47047 * 154.31069 * 3 2 1 23 23 H 1.09000 * 109.46919 * 274.30794 * 3 2 1 24 24 H 1.09002 * 109.47485 * 300.00902 * 7 5 4 25 25 H 1.09004 * 109.47060 * 60.00250 * 7 5 4 26 26 H 1.08995 * 109.47021 * 300.00749 * 8 7 5 27 27 H 1.09004 * 109.46840 * 59.99997 * 8 7 5 28 28 H 0.96999 * 119.99536 * 179.97438 * 12 11 9 29 29 H 1.08990 * 117.49990 * 145.01974 * 17 2 1 30 30 H 1.09004 * 117.49237 * 359.97438 * 17 2 1 31 31 H 1.08999 * 117.49685 * 0.02562 * 18 2 1 32 32 H 1.08997 * 117.50044 * 214.98097 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 8 1.3789 2.3048 0.7715 5 6 1.8223 3.5679 0.8710 6 8 2.8539 3.8904 0.3310 7 6 1.0334 4.5837 1.6563 8 6 1.7522 5.9336 1.6112 9 6 0.9630 6.9496 2.3960 10 1 0.0412 6.6613 2.8791 11 6 1.4179 8.2472 2.4972 12 7 2.5403 8.5984 1.9085 13 14 0.4393 9.5068 3.4694 14 1 0.8918 9.5007 4.8838 15 1 0.6526 10.8561 2.8873 16 1 -1.0045 9.1647 3.4103 17 6 2.2365 -1.1210 -0.7649 18 6 2.2364 -1.1209 0.7651 19 1 -0.3633 -0.9261 0.4455 20 1 -0.3634 0.8489 0.5792 21 1 -0.3633 0.0772 -1.0248 22 1 3.1823 1.3085 0.4455 23 1 2.2773 1.7414 -1.0248 24 1 0.0393 4.6871 1.2214 25 1 0.9445 4.2535 2.6914 26 1 2.7464 5.8305 2.0459 27 1 1.8408 6.2635 0.5760 28 1 2.8601 9.5115 1.9794 29 1 3.1715 -0.8752 -1.2682 30 1 1.6112 -1.8587 -1.2678 31 1 1.6112 -1.8585 1.2681 32 1 3.1715 -0.8750 1.2684 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308291004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:14 Heat of formation + Delta-G solvation = -102.224924 kcal Electronic energy + Delta-G solvation = -13669.404173 eV Core-core repulsion = 11208.532596 eV Total energy + Delta-G solvation = -2460.871577 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.52895 -39.16304 -37.22109 -35.65191 -33.16551 -29.85561 -28.72154 -27.41037 -24.10780 -23.34460 -21.45404 -20.24428 -19.08318 -18.12409 -17.65669 -17.21815 -16.47908 -15.88762 -15.50474 -14.93896 -14.30651 -14.24214 -14.00731 -13.72079 -13.29068 -13.10806 -12.82959 -12.51085 -12.40026 -12.18474 -12.01397 -11.83294 -11.75447 -11.48656 -11.33297 -11.13007 -10.60997 -10.57603 -8.20056 -6.34072 1.22836 1.43666 1.46314 1.57138 1.67518 2.43454 2.77611 3.13884 3.59660 3.74119 3.89468 3.99801 4.09151 4.33843 4.38472 4.45820 4.49664 4.74934 4.86754 4.94615 4.98354 5.01874 5.08649 5.23079 5.35839 5.45203 5.48376 5.54392 5.80307 6.12938 6.78741 6.86242 7.36403 8.92781 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.077769 B = 0.005058 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.952949 B = 5533.948520 C = 5751.520450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.149 4.149 3 C 0.096 3.904 4 O -0.349 6.349 5 C 0.464 3.536 6 O -0.548 6.548 7 C -0.093 4.093 8 C 0.038 3.962 9 C -0.545 4.545 10 H 0.078 0.922 11 C -0.004 4.004 12 N -0.937 5.937 13 Si 0.975 3.025 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.255 1.255 17 C -0.153 4.153 18 C -0.169 4.169 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.116 0.884 25 H 0.116 0.884 26 H -0.011 1.011 27 H -0.011 1.011 28 H 0.264 0.736 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -18.685 -2.351 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.149 4.149 3 C 0.022 3.978 4 O -0.266 6.266 5 C 0.309 3.691 6 O -0.438 6.438 7 C -0.131 4.131 8 C 0.000 4.000 9 C -0.582 4.582 10 H 0.096 0.904 11 C -0.202 4.202 12 N -0.577 5.577 13 Si 0.799 3.201 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.179 1.179 17 C -0.190 4.190 18 C -0.205 4.205 19 H 0.093 0.907 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.534 -18.498 -2.561 19.217 hybrid contribution 0.387 0.996 0.117 1.075 sum -4.148 -17.502 -2.444 18.152 Atomic orbital electron populations 1.21255 0.90430 1.02836 1.02330 1.21422 0.96565 0.87938 1.09001 1.22595 0.93106 0.87161 0.94928 1.86506 1.52252 1.20232 1.67594 1.24555 0.84201 0.82343 0.77970 1.90622 1.26280 1.80555 1.46318 1.21512 0.99826 0.91083 1.00646 1.18804 0.94760 0.90673 0.95730 1.21647 1.08857 0.95051 1.32663 0.90380 1.26110 0.96105 1.01190 0.96762 1.70165 1.23009 1.19338 1.45152 0.85294 0.79319 0.77181 0.78302 1.19691 1.21157 1.17917 1.23185 1.02304 0.98929 0.94594 1.23327 1.02296 1.00059 0.94861 0.90706 0.92248 0.91834 0.91848 0.91644 0.86561 0.86602 0.99268 0.99225 0.92742 0.88340 0.86295 0.86858 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.75 71.98 0.70 -1.42 16 2 C -0.15 -3.10 2.59 -52.18 -0.14 -3.23 16 3 C 0.10 2.69 5.59 71.98 0.40 3.10 16 4 O -0.35 -11.58 8.79 -51.46 -0.45 -12.03 16 5 C 0.46 18.83 7.96 71.24 0.57 19.39 16 6 O -0.55 -26.42 15.73 21.97 0.35 -26.08 16 7 C -0.09 -3.83 5.75 29.85 0.17 -3.66 16 8 C 0.04 2.06 4.26 29.85 0.13 2.19 16 9 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 10 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 11 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 12 N -0.94 -58.65 13.29 21.45 0.28 -58.37 16 13 Si 0.98 43.82 29.54 68.60 2.03 45.84 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 17 C -0.15 -2.37 9.97 30.60 0.31 -2.07 16 18 C -0.17 -2.83 9.82 30.60 0.30 -2.53 16 19 H 0.07 1.12 7.90 -2.39 -0.02 1.11 16 20 H 0.06 1.34 6.87 -2.39 -0.02 1.32 16 21 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 22 H 0.06 1.82 7.89 -2.39 -0.02 1.80 16 23 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 24 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 25 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 26 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 27 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.11 1.54 8.05 -2.39 -0.02 1.52 16 32 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 Total: -1.00 -69.65 278.78 6.42 -63.23 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.08 Total: 5.79 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.14 Total: -18.38 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.28 Total: -58.37 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.11 Total: -38.11 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.65 6.42 -63.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308291004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.991 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds