Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.55139 * 2 1 4 4 C 1.52999 * 117.49610 * 214.28279 * 2 1 3 5 5 C 1.52998 * 60.00435 * 252.51197 * 4 2 1 6 6 C 1.52999 * 117.51608 * 107.47968 * 5 4 2 7 7 O 1.45194 * 117.50520 * 252.51242 * 5 4 2 8 8 C 1.34232 * 117.00356 * 133.88627 * 7 5 4 9 9 O 1.20824 * 119.99592 * 5.16663 * 8 7 5 10 10 C 1.50703 * 120.00153 * 185.16164 * 8 7 5 11 11 C 1.52995 * 109.47077 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47077 * 179.97438 * 11 10 8 13 13 H 1.07989 * 119.99825 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99752 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00128 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 119.99726 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47206 * 90.00184 * 16 14 12 18 18 H 1.48498 * 109.47338 * 210.00446 * 16 14 12 19 19 H 1.48503 * 109.47157 * 330.00229 * 16 14 12 20 20 H 1.08994 * 109.46863 * 274.33637 * 1 2 3 21 21 H 1.08997 * 109.46485 * 34.33478 * 1 2 3 22 22 H 1.09002 * 109.46855 * 154.33354 * 1 2 3 23 23 H 1.09000 * 117.49355 * 145.02294 * 4 2 1 24 24 H 1.08997 * 117.50251 * 0.02562 * 4 2 1 25 25 H 1.09003 * 109.47108 * 211.73466 * 6 5 4 26 26 H 1.09005 * 109.47221 * 331.72927 * 6 5 4 27 27 H 1.08997 * 109.47134 * 91.73517 * 6 5 4 28 28 H 1.08997 * 109.46706 * 60.00240 * 10 8 7 29 29 H 1.09001 * 109.46990 * 300.00188 * 10 8 7 30 30 H 1.09001 * 109.46960 * 299.99712 * 11 10 8 31 31 H 1.08997 * 109.47268 * 59.99806 * 11 10 8 32 32 H 0.96996 * 119.99982 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1214 -0.7645 5 6 2.2365 -1.1207 0.7655 6 6 1.3588 -2.1553 1.4728 7 8 3.4821 -0.7931 1.4359 8 6 3.4155 0.0811 2.4524 9 8 2.3420 0.4852 2.8322 10 6 4.6795 0.5583 3.1198 11 6 4.3260 1.5403 4.2386 12 6 5.5900 2.0171 4.9065 13 1 6.5494 1.6561 4.5667 14 6 5.5215 2.9149 5.9507 15 7 4.3531 3.3548 6.3641 16 14 7.0882 3.5053 6.7790 17 1 7.5832 4.7242 6.0902 18 1 6.8069 3.8208 8.2025 19 1 8.1201 2.4401 6.7027 20 1 -0.3633 0.0777 1.0247 21 1 -0.3632 0.8486 -0.5796 22 1 -0.3633 -0.9263 -0.4451 23 1 3.1715 -0.8758 -1.2678 24 1 1.6112 -1.8589 -1.2677 25 1 0.9994 -1.7430 2.4157 26 1 0.5086 -2.4053 0.8381 27 1 1.9430 -3.0544 1.6686 28 1 5.3124 1.0563 2.3854 29 1 5.2126 -0.2944 3.5403 30 1 3.7928 2.3931 3.8184 31 1 3.6932 1.0420 4.9729 32 1 4.3050 3.9867 7.0984 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308296268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = -77.755424 kcal Electronic energy + Delta-G solvation = -14015.692938 eV Core-core repulsion = 11555.882439 eV Total energy + Delta-G solvation = -2459.810499 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.21625 -37.72128 -35.11441 -33.55457 -31.09568 -29.16986 -27.95574 -26.05256 -22.74989 -21.42850 -20.27952 -18.76985 -17.13032 -16.53210 -15.76426 -15.50849 -14.52139 -14.21844 -14.01403 -13.48697 -13.02393 -12.75555 -12.30015 -12.26161 -12.20843 -11.87747 -11.43076 -11.21326 -10.97771 -10.86052 -10.63600 -10.16134 -10.04284 -9.79539 -9.62785 -9.33855 -9.16047 -8.37210 -6.01022 -4.05866 2.85944 2.98513 3.31998 3.38168 3.41281 3.72997 4.43587 4.51484 4.62366 4.84882 5.19956 5.25482 5.34388 5.56396 5.60513 5.66894 5.73745 5.82986 5.96042 6.03738 6.12864 6.16141 6.22417 6.27301 6.71642 7.02970 7.67285 7.74579 7.98801 8.28966 8.48201 9.01337 9.58143 11.10035 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.064477 B = 0.005873 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.158042 B = 4766.099127 C = 4914.086448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.154 4.154 3 H 0.108 0.892 4 C -0.155 4.155 5 C 0.043 3.957 6 C -0.127 4.127 7 O -0.336 6.336 8 C 0.453 3.547 9 O -0.496 6.496 10 C -0.104 4.104 11 C 0.034 3.966 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 -9.005 -12.506 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 H 0.126 0.874 4 C -0.192 4.192 5 C 0.006 3.994 6 C -0.184 4.184 7 O -0.254 6.254 8 C 0.296 3.704 9 O -0.381 6.381 10 C -0.141 4.141 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.120 0.880 24 H 0.125 0.875 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.177 -8.786 -12.251 15.940 hybrid contribution 0.806 0.440 0.498 1.045 sum -4.370 -8.346 -11.753 15.063 Atomic orbital electron populations 1.21337 0.92093 1.01558 1.02576 1.22852 0.96243 0.95107 1.03069 0.87381 1.23530 1.02791 1.01277 0.91571 1.22428 0.86732 0.99650 0.90616 1.21540 0.98213 0.97254 1.01354 1.86582 1.33794 1.59122 1.45896 1.24807 0.93460 0.75006 0.77147 1.90617 1.31391 1.54110 1.61963 1.21770 0.91109 1.01660 0.99579 1.19006 0.97194 0.93003 0.91114 1.21163 0.92634 1.26185 1.16679 0.92334 1.25020 0.96170 0.96233 0.96891 1.69993 1.23542 1.31743 1.27545 0.86540 0.83330 0.79109 0.78689 1.20606 1.21176 1.19784 0.91436 0.92037 0.92557 0.87952 0.87492 0.90960 0.90905 0.91522 0.89136 0.89074 0.95631 0.95575 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.06 37.16 0.34 -1.01 16 2 C -0.15 -2.09 5.69 -90.61 -0.52 -2.61 16 3 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.15 -1.76 9.82 -26.73 -0.26 -2.03 16 5 C 0.04 0.64 2.14 -90.62 -0.19 0.44 16 6 C -0.13 -1.63 9.31 37.16 0.35 -1.28 16 7 O -0.34 -5.98 10.39 -39.26 -0.41 -6.39 16 8 C 0.45 9.28 7.78 36.01 0.28 9.56 16 9 O -0.50 -11.44 14.99 -18.75 -0.28 -11.72 16 10 C -0.10 -2.19 5.75 -27.88 -0.16 -2.35 16 11 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 12 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.52 7.28 -51.93 -0.38 0.14 16 23 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.11 0.95 8.05 -51.93 -0.42 0.53 16 25 H 0.07 1.07 7.82 -51.93 -0.41 0.66 16 26 H 0.07 0.73 6.97 -51.93 -0.36 0.37 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 29 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 277.27 15.07 4.18 4.18 Total: -1.00 -31.95 277.27 -6.40 -38.35 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.91 Total: -2.37 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.70 Total: -12.12 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.69 Total: -18.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.95 -6.40 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308296268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.402 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds