Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 115.55869 * 2 1 4 4 C 1.52997 * 117.49806 * 145.68828 * 2 1 3 5 5 C 1.52997 * 60.00015 * 107.48606 * 4 2 1 6 6 C 1.53005 * 117.50032 * 107.50943 * 5 4 2 7 7 O 1.45193 * 117.50051 * 252.51023 * 5 4 2 8 8 C 1.34236 * 116.99808 * 294.91700 * 7 5 4 9 9 O 1.20821 * 119.99968 * 354.76906 * 8 7 5 10 10 C 1.50703 * 119.99788 * 174.77073 * 8 7 5 11 11 C 1.53003 * 109.46604 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46604 * 180.02562 * 11 10 8 13 13 H 1.07993 * 120.00736 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99774 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99979 * 359.72615 * 14 12 11 16 16 Si 1.86797 * 120.00132 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47114 * 90.00178 * 16 14 12 18 18 H 1.48505 * 109.47432 * 210.00087 * 16 14 12 19 19 H 1.48496 * 109.47018 * 330.00298 * 16 14 12 20 20 H 1.08996 * 109.47247 * 205.69555 * 1 2 3 21 21 H 1.09010 * 109.46944 * 325.68963 * 1 2 3 22 22 H 1.08999 * 109.47451 * 85.69009 * 1 2 3 23 23 H 1.08993 * 117.49985 * 359.97438 * 4 2 1 24 24 H 1.09003 * 117.49748 * 214.97687 * 4 2 1 25 25 H 1.08995 * 109.47615 * 208.29493 * 6 5 4 26 26 H 1.09000 * 109.46569 * 328.29877 * 6 5 4 27 27 H 1.08997 * 109.46924 * 88.28860 * 6 5 4 28 28 H 1.08995 * 109.47413 * 60.00303 * 10 8 7 29 29 H 1.08999 * 109.46924 * 299.99858 * 10 8 7 30 30 H 1.08991 * 109.47329 * 60.00413 * 11 10 8 31 31 H 1.08999 * 109.47228 * 299.99505 * 11 10 8 32 32 H 0.97006 * 120.00039 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7650 6 6 3.5491 -0.7765 -1.4715 7 8 1.4035 -2.1034 -1.4353 8 6 1.7309 -3.3946 -1.2697 9 8 2.7350 -3.6907 -0.6665 10 6 0.8459 -4.4749 -1.8362 11 6 1.4414 -5.8457 -1.5088 12 6 0.5568 -6.9260 -2.0758 13 1 -0.3401 -6.6614 -2.6161 14 6 0.8931 -8.2523 -1.9058 15 7 1.9887 -8.5745 -1.2534 16 14 -0.2037 -9.5914 -2.6080 17 1 0.2332 -9.9152 -3.9899 18 1 -0.1057 -10.8069 -1.7604 19 1 -1.6106 -9.1169 -2.6321 20 1 -0.3633 -0.9260 0.4456 21 1 -0.3633 0.8489 0.5793 22 1 -0.3634 0.0772 -1.0247 23 1 1.6113 -1.8581 1.2686 24 1 3.1716 -0.8751 1.2683 25 1 3.3331 -0.3296 -2.4419 26 1 4.1141 -0.0698 -0.8637 27 1 4.1352 -1.6846 -1.6120 28 1 0.7762 -4.3576 -2.9176 29 1 -0.1488 -4.3970 -1.3974 30 1 1.5107 -5.9628 -0.4274 31 1 2.4362 -5.9239 -1.9473 32 1 2.2251 -9.5076 -1.1334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308296271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = -77.922241 kcal Electronic energy + Delta-G solvation = -14016.399795 eV Core-core repulsion = 11556.582062 eV Total energy + Delta-G solvation = -2459.817733 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.21481 -37.67001 -34.97281 -33.55797 -31.10829 -29.95751 -27.14556 -26.10078 -22.93885 -21.22968 -20.31873 -19.02164 -16.97493 -16.14487 -15.99426 -15.42823 -14.87176 -14.47180 -13.57237 -13.33514 -13.15844 -12.75982 -12.31276 -12.27355 -12.19499 -11.88557 -11.47928 -11.21044 -10.98840 -10.86753 -10.64122 -10.05155 -10.01928 -9.79892 -9.74930 -9.32834 -9.15962 -8.37290 -6.01112 -4.06006 2.85285 2.97353 3.31919 3.38075 3.41100 3.75569 4.43307 4.47578 4.64014 4.86174 5.17399 5.21785 5.34274 5.53722 5.71878 5.73512 5.76735 5.81829 5.89774 6.03631 6.12352 6.15471 6.22082 6.26877 6.71388 7.02903 7.67127 7.74404 7.98660 8.28812 8.48149 9.01203 9.58029 11.09910 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.059014 B = 0.005985 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.352767 B = 4677.167549 C = 4871.873874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.131 4.131 3 H 0.114 0.886 4 C -0.178 4.178 5 C 0.043 3.957 6 C -0.126 4.126 7 O -0.332 6.332 8 C 0.452 3.548 9 O -0.497 6.497 10 C -0.103 4.103 11 C 0.034 3.966 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 16.250 1.179 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 H 0.132 0.868 4 C -0.215 4.215 5 C 0.006 3.994 6 C -0.183 4.183 7 O -0.250 6.250 8 C 0.296 3.704 9 O -0.382 6.382 10 C -0.141 4.141 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.864 16.020 1.425 16.107 hybrid contribution -0.380 -0.825 -0.264 0.946 sum -1.245 15.195 1.161 15.290 Atomic orbital electron populations 1.21287 0.92065 1.01965 1.02421 1.22823 0.96478 0.94025 1.01618 0.86762 1.23621 1.02956 1.01007 0.93894 1.22407 0.93218 0.92523 0.91286 1.21534 0.93799 1.02482 1.00492 1.86572 1.54451 1.16678 1.67269 1.24819 0.85965 0.82293 0.77362 1.90620 1.26264 1.82820 1.38531 1.21767 0.98127 0.92608 1.01584 1.19007 0.96553 0.86686 0.98077 1.21162 1.08831 0.90915 1.35750 0.92331 1.25022 0.95260 0.98829 0.95207 1.69999 1.23918 1.17877 1.41026 0.86540 0.80870 0.81315 0.78947 1.20588 1.21181 1.19794 0.92226 0.92241 0.91555 0.88117 0.87944 0.91502 0.91061 0.90979 0.89077 0.89133 0.95634 0.95593 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.72 37.16 0.36 -0.94 16 2 C -0.13 -1.51 6.13 -90.62 -0.56 -2.06 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.18 -2.40 9.14 -26.73 -0.24 -2.64 16 5 C 0.04 0.63 2.11 -90.62 -0.19 0.44 16 6 C -0.13 -1.62 9.94 37.16 0.37 -1.25 16 7 O -0.33 -5.81 9.82 -39.27 -0.39 -6.20 16 8 C 0.45 9.22 7.78 36.01 0.28 9.50 16 9 O -0.50 -11.50 14.95 -18.75 -0.28 -11.78 16 10 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 11 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 12 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 21 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.10 1.50 8.05 -51.93 -0.42 1.08 16 24 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 28 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 279.38 15.07 4.21 4.21 Total: -1.00 -31.90 279.38 -6.40 -38.31 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.99 Total: -2.49 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.67 Total: -12.12 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.67 Total: -17.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.90 -6.40 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308296271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.614 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds