Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 115.55869 * 2 1 4 4 C 1.52997 * 117.49806 * 145.68828 * 2 1 3 5 5 C 1.52997 * 60.00015 * 107.48606 * 4 2 1 6 6 C 1.53005 * 117.50032 * 107.50943 * 5 4 2 7 7 O 1.45193 * 117.50051 * 252.51023 * 5 4 2 8 8 C 1.34236 * 116.99808 * 294.91700 * 7 5 4 9 9 O 1.20821 * 119.99968 * 354.76906 * 8 7 5 10 10 C 1.50703 * 119.99788 * 174.77073 * 8 7 5 11 11 C 1.53003 * 109.46604 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46604 * 180.02562 * 11 10 8 13 13 H 1.07993 * 120.00736 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99774 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99979 * 359.72615 * 14 12 11 16 16 Si 1.86797 * 120.00132 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47114 * 90.00178 * 16 14 12 18 18 H 1.48505 * 109.47432 * 210.00087 * 16 14 12 19 19 H 1.48496 * 109.47018 * 330.00298 * 16 14 12 20 20 H 1.08996 * 109.47247 * 205.69555 * 1 2 3 21 21 H 1.09010 * 109.46944 * 325.68963 * 1 2 3 22 22 H 1.08999 * 109.47451 * 85.69009 * 1 2 3 23 23 H 1.08993 * 117.49985 * 359.97438 * 4 2 1 24 24 H 1.09003 * 117.49748 * 214.97687 * 4 2 1 25 25 H 1.08995 * 109.47615 * 208.29493 * 6 5 4 26 26 H 1.09000 * 109.46569 * 328.29877 * 6 5 4 27 27 H 1.08997 * 109.46924 * 88.28860 * 6 5 4 28 28 H 1.08995 * 109.47413 * 60.00303 * 10 8 7 29 29 H 1.08999 * 109.46924 * 299.99858 * 10 8 7 30 30 H 1.08991 * 109.47329 * 60.00413 * 11 10 8 31 31 H 1.08999 * 109.47228 * 299.99505 * 11 10 8 32 32 H 0.97006 * 120.00039 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7650 6 6 3.5491 -0.7765 -1.4715 7 8 1.4035 -2.1034 -1.4353 8 6 1.7309 -3.3946 -1.2697 9 8 2.7350 -3.6907 -0.6665 10 6 0.8459 -4.4749 -1.8362 11 6 1.4414 -5.8457 -1.5088 12 6 0.5568 -6.9260 -2.0758 13 1 -0.3401 -6.6614 -2.6161 14 6 0.8931 -8.2523 -1.9058 15 7 1.9887 -8.5745 -1.2534 16 14 -0.2037 -9.5914 -2.6080 17 1 0.2332 -9.9152 -3.9899 18 1 -0.1057 -10.8069 -1.7604 19 1 -1.6106 -9.1169 -2.6321 20 1 -0.3633 -0.9260 0.4456 21 1 -0.3633 0.8489 0.5793 22 1 -0.3634 0.0772 -1.0247 23 1 1.6113 -1.8581 1.2686 24 1 3.1716 -0.8751 1.2683 25 1 3.3331 -0.3296 -2.4419 26 1 4.1141 -0.0698 -0.8637 27 1 4.1352 -1.6846 -1.6120 28 1 0.7762 -4.3576 -2.9176 29 1 -0.1488 -4.3970 -1.3974 30 1 1.5107 -5.9628 -0.4274 31 1 2.4362 -5.9239 -1.9473 32 1 2.2251 -9.5076 -1.1334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308296271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = -96.517226 kcal Electronic energy + Delta-G solvation = -14017.206134 eV Core-core repulsion = 11556.582062 eV Total energy + Delta-G solvation = -2460.624072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.65973 -39.00423 -36.36830 -35.65563 -33.12381 -30.94220 -28.14976 -28.07943 -24.74859 -22.57168 -21.65670 -20.49265 -18.86911 -17.75341 -17.41495 -17.00655 -16.49273 -16.08124 -15.04096 -14.71795 -14.40837 -14.21136 -13.93646 -13.44913 -13.31699 -13.24671 -12.95153 -12.84458 -12.51927 -12.40068 -12.25617 -12.02629 -11.75368 -11.50324 -11.31444 -10.90186 -10.59281 -10.58473 -8.21419 -6.35683 1.25717 1.42269 1.45104 1.55592 1.61563 2.41850 2.68199 3.12275 3.38884 3.62921 3.78276 3.94437 4.33584 4.35271 4.41194 4.57481 4.68284 4.74619 4.77118 4.83446 4.91077 4.99210 5.09855 5.13484 5.38343 5.42644 5.51198 5.52543 5.78559 6.11537 6.80039 6.89686 7.34776 8.91343 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.059014 B = 0.005985 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.352767 B = 4677.167549 C = 4871.873874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 H 0.151 0.849 4 C -0.190 4.190 5 C 0.004 3.996 6 C -0.122 4.122 7 O -0.327 6.327 8 C 0.460 3.540 9 O -0.534 6.534 10 C -0.095 4.095 11 C 0.041 3.959 12 C -0.546 4.546 13 H 0.077 0.923 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.256 1.256 20 H 0.041 0.959 21 H 0.087 0.913 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.113 0.887 29 H 0.112 0.888 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 17.863 0.466 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.114 4.114 3 H 0.169 0.831 4 C -0.227 4.227 5 C -0.033 4.033 6 C -0.179 4.179 7 O -0.244 6.244 8 C 0.304 3.696 9 O -0.422 6.422 10 C -0.132 4.132 11 C 0.004 3.996 12 C -0.583 4.583 13 H 0.095 0.905 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.180 1.180 20 H 0.060 0.940 21 H 0.106 0.894 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.135 0.865 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.436 17.672 0.698 17.852 hybrid contribution 0.129 -1.230 0.004 1.236 sum -2.306 16.442 0.702 16.618 Atomic orbital electron populations 1.21368 0.91586 1.02331 1.02882 1.23055 0.96847 0.94243 0.97241 0.83122 1.23674 1.03918 1.02062 0.93092 1.23041 0.94784 0.93497 0.92000 1.21551 0.92819 1.01816 1.01739 1.86516 1.54915 1.15667 1.67266 1.24549 0.85064 0.83437 0.76502 1.90607 1.27772 1.83622 1.40230 1.21517 0.98623 0.89965 1.03127 1.18769 0.95160 0.90365 0.95333 1.21640 1.09443 0.91559 1.35685 0.90515 1.26114 0.96757 1.01894 0.95390 1.70166 1.26181 1.18605 1.42645 0.85290 0.79235 0.77436 0.78114 1.19645 1.21052 1.17971 0.94007 0.89419 0.91397 0.90297 0.86464 0.90219 0.88035 0.94032 0.86912 0.86961 0.99267 0.99275 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 9.72 71.98 0.70 -1.66 16 2 C -0.10 -1.92 6.13 -10.79 -0.07 -1.98 16 3 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.19 -4.95 9.14 30.59 0.28 -4.67 16 5 C 0.00 0.10 2.11 -10.79 -0.02 0.08 16 6 C -0.12 -2.96 9.94 71.98 0.72 -2.25 16 7 O -0.33 -11.26 9.82 -51.47 -0.51 -11.76 16 8 C 0.46 19.08 7.78 71.24 0.55 19.64 16 9 O -0.53 -25.80 14.95 21.98 0.33 -25.47 16 10 C -0.10 -4.00 5.75 29.85 0.17 -3.83 16 11 C 0.04 2.28 4.26 29.85 0.13 2.40 16 12 C -0.55 -31.00 9.11 25.60 0.23 -30.76 16 13 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 14 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 15 N -0.94 -58.86 13.29 21.45 0.28 -58.58 16 16 Si 0.98 44.08 29.54 68.60 2.03 46.11 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 H 0.04 0.94 7.90 -2.39 -0.02 0.92 16 21 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 24 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.10 1.80 8.11 -2.39 -0.02 1.78 16 27 H 0.04 1.25 7.77 -2.39 -0.02 1.23 16 28 H 0.11 4.26 8.14 -2.39 -0.02 4.24 16 29 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 30 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 31 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 32 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -71.31 279.38 6.37 -64.94 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.08 Total: 7.54 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.15 Total: -22.78 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.28 Total: -58.58 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.18 Total: -37.23 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.31 6.37 -64.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308296271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.577 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds