Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 115.56084 * 2 1 4 4 C 1.52997 * 117.50460 * 145.69877 * 2 1 3 5 5 C 1.52999 * 60.00167 * 107.49071 * 4 2 1 6 6 H 1.08998 * 117.49485 * 252.48785 * 5 4 2 7 7 C 1.52999 * 117.50158 * 107.49461 * 5 4 2 8 8 C 1.50701 * 109.47065 * 116.38735 * 7 5 4 9 9 O 1.20822 * 119.99988 * 0.02562 * 8 7 5 10 10 O 1.34231 * 119.99870 * 179.97438 * 8 7 5 11 11 C 1.45198 * 116.99983 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46884 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47171 * 89.99544 * 17 15 13 19 19 H 1.48500 * 109.46632 * 209.99795 * 17 15 13 20 20 H 1.48494 * 109.47053 * 329.99231 * 17 15 13 21 21 H 1.09007 * 109.46845 * 205.68614 * 1 2 3 22 22 H 1.09002 * 109.47251 * 325.67755 * 1 2 3 23 23 H 1.08996 * 109.47515 * 85.68661 * 1 2 3 24 24 H 1.08995 * 117.50019 * 359.97438 * 4 2 1 25 25 H 1.09007 * 117.51850 * 214.97219 * 4 2 1 26 26 H 1.09005 * 109.46784 * 356.38996 * 7 5 4 27 27 H 1.08998 * 109.46854 * 236.39452 * 7 5 4 28 28 H 1.09001 * 109.46782 * 60.00304 * 11 10 8 29 29 H 1.08992 * 109.47385 * 300.00392 * 11 10 8 30 30 H 1.09002 * 109.47398 * 300.00338 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00518 * 12 11 10 32 32 H 0.97000 * 120.00333 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6116 -1.8585 -1.2685 7 6 3.5490 -0.7756 -1.4717 8 6 4.0215 -1.9673 -2.2640 9 8 3.3746 -2.9878 -2.2640 10 8 5.1605 -1.8947 -2.9705 11 6 5.5541 -3.0805 -3.7102 12 6 6.8672 -2.8093 -4.4472 13 6 7.2755 -4.0399 -5.2154 14 1 6.6597 -4.9265 -5.1816 15 6 8.4351 -4.0339 -5.9612 16 7 9.1846 -2.9540 -6.0027 17 14 8.9407 -5.5590 -6.9140 18 1 8.3570 -5.5065 -8.2784 19 1 10.4216 -5.6137 -7.0108 20 1 8.4457 -6.7692 -6.2100 21 1 -0.3633 -0.9262 0.4455 22 1 -0.3634 0.8487 0.5795 23 1 -0.3634 0.0773 -1.0247 24 1 1.6114 -1.8584 1.2683 25 1 3.1718 -0.8756 1.2681 26 1 4.3022 -0.5108 -0.7297 27 1 3.3889 0.0674 -2.1439 28 1 4.7773 -3.3330 -4.4320 29 1 5.6911 -3.9115 -3.0183 30 1 6.7306 -1.9782 -5.1390 31 1 7.6438 -2.5571 -3.7251 32 1 10.0006 -2.9498 -6.5271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308318848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = -106.502501 kcal Electronic energy + Delta-G solvation = -13413.753618 eV Core-core repulsion = 10952.696551 eV Total energy + Delta-G solvation = -2461.057066 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.48161 -38.93139 -37.53163 -35.45966 -32.58498 -31.46692 -28.64006 -26.96093 -23.58443 -22.64006 -21.63314 -20.98585 -18.96185 -18.09192 -17.69383 -17.39355 -16.50506 -15.84954 -15.47920 -14.95047 -14.40012 -14.25554 -13.92960 -13.66472 -13.13606 -13.02776 -13.01497 -12.60339 -12.58215 -12.35497 -12.20455 -11.87636 -11.53912 -11.48876 -11.35146 -10.90140 -10.66179 -10.62381 -8.28235 -6.41776 1.21368 1.40373 1.42484 1.53563 1.77420 2.39523 2.84052 3.05984 3.66072 3.68833 3.92449 4.07552 4.19973 4.24416 4.42724 4.49379 4.56901 4.66657 4.69958 4.91999 4.97419 4.98473 5.22253 5.24473 5.30446 5.44850 5.47642 5.58206 5.74372 6.05248 6.70628 6.77587 7.28119 8.84408 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.095509 B = 0.004474 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.094438 B = 6257.447083 C = 6394.876851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 H 0.123 0.877 4 C -0.175 4.175 5 C -0.166 4.166 6 H 0.095 0.905 7 C -0.074 4.074 8 C 0.452 3.548 9 O -0.547 6.547 10 O -0.368 6.368 11 C 0.090 3.910 12 C 0.030 3.970 13 C -0.553 4.553 14 H 0.064 0.936 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.975 3.025 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.264 1.264 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 6.687 11.389 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 H 0.141 0.859 4 C -0.211 4.211 5 C -0.184 4.184 6 H 0.113 0.887 7 C -0.111 4.111 8 C 0.298 3.702 9 O -0.437 6.437 10 O -0.284 6.284 11 C 0.017 3.983 12 C -0.007 4.007 13 C -0.590 4.590 14 H 0.082 0.918 15 C -0.193 4.193 16 N -0.565 5.565 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.188 1.188 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.357 6.442 11.296 18.641 hybrid contribution 0.510 -0.955 -0.701 1.289 sum -12.847 5.487 10.595 17.533 Atomic orbital electron populations 1.21417 0.92122 1.02518 1.02233 1.22561 0.95882 0.94590 1.02014 0.85865 1.23348 1.03384 1.01682 0.92721 1.22128 0.97512 1.03758 0.94988 0.88714 1.21054 0.97407 0.93260 0.99340 1.24597 0.77861 0.90746 0.77013 1.90594 1.56453 1.34184 1.62509 1.86521 1.40642 1.42963 1.58309 1.23126 0.97685 0.84234 0.93300 1.18986 0.90306 0.97078 0.94313 1.21382 1.08471 0.99149 1.30023 0.91800 1.25975 0.95990 0.99974 0.97346 1.70092 1.14947 1.30011 1.41491 0.85305 0.77485 0.78664 0.78740 1.19485 1.20275 1.18792 0.92811 0.90503 0.92200 0.88672 0.87598 0.85552 0.85287 0.92409 0.92452 0.97466 0.97459 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 10.19 71.98 0.73 -0.98 16 2 C -0.13 -2.04 6.13 -10.80 -0.07 -2.10 16 3 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 4 C -0.17 -3.05 9.82 30.59 0.30 -2.75 16 5 C -0.17 -3.56 5.14 -10.79 -0.06 -3.62 16 6 H 0.09 2.52 7.31 -2.39 -0.02 2.50 16 7 C -0.07 -1.67 6.09 29.85 0.18 -1.49 16 8 C 0.45 15.75 7.96 71.24 0.57 16.32 16 9 O -0.55 -22.15 15.31 21.98 0.34 -21.82 16 10 O -0.37 -15.02 10.22 -51.42 -0.53 -15.54 16 11 C 0.09 4.16 5.40 71.98 0.39 4.55 16 12 C 0.03 1.66 5.35 29.85 0.16 1.82 16 13 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 14 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 17 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H 0.05 0.76 7.90 -2.38 -0.02 0.74 16 22 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 25 H 0.11 1.62 8.03 -2.38 -0.02 1.60 16 26 H 0.13 2.32 7.88 -2.38 -0.02 2.30 16 27 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 29 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -67.19 280.66 6.11 -61.08 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.08 Total: 4.87 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 2.90 Total: -19.02 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.28 Total: -55.50 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.19 Total: -37.36 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.19 6.11 -61.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308318848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.423 kcal (2) G-P(sol) polarization free energy of solvation -67.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds