Wall clock time and date at job start Mon Mar 30 2020 02:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 115.54608 * 2 1 4 4 C 1.53008 * 117.49939 * 214.29462 * 2 1 3 5 5 C 1.52998 * 117.49958 * 145.67134 * 2 1 3 6 6 H 1.08995 * 117.49709 * 214.99992 * 5 2 1 7 7 C 1.52992 * 117.50002 * 359.97438 * 5 2 1 8 8 C 1.50700 * 109.47257 * 185.00008 * 7 5 2 9 9 O 1.20822 * 119.99958 * 359.97438 * 8 7 5 10 10 O 1.34234 * 120.00068 * 180.02562 * 8 7 5 11 11 C 1.45196 * 116.99938 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47070 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47221 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00171 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00377 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99898 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47093 * 90.00118 * 17 15 13 19 19 H 1.48500 * 109.46823 * 210.00246 * 17 15 13 20 20 H 1.48499 * 109.46973 * 329.99936 * 17 15 13 21 21 H 1.08999 * 109.47211 * 274.32772 * 1 2 3 22 22 H 1.08996 * 109.47376 * 34.33415 * 1 2 3 23 23 H 1.09007 * 109.47110 * 154.33001 * 1 2 3 24 24 H 1.08998 * 117.49426 * 145.01997 * 4 2 1 25 25 H 1.08992 * 117.49621 * 359.97438 * 4 2 1 26 26 H 1.09004 * 109.47330 * 65.00030 * 7 5 2 27 27 H 1.08997 * 109.47279 * 305.00517 * 7 5 2 28 28 H 1.08996 * 109.47465 * 299.99911 * 11 10 8 29 29 H 1.08999 * 109.47008 * 59.99921 * 11 10 8 30 30 H 1.08998 * 109.47592 * 300.00297 * 12 11 10 31 31 H 1.08999 * 109.47084 * 60.00195 * 12 11 10 32 32 H 0.96994 * 120.00157 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2365 -1.1213 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8746 1.2688 7 6 1.3589 -2.1553 1.4726 8 6 2.2302 -3.0958 2.2647 9 8 3.4300 -2.9534 2.2632 10 8 1.6734 -4.0923 2.9710 11 6 2.5736 -4.9597 3.7095 12 6 1.7626 -6.0267 4.4474 13 6 2.6968 -6.9267 5.2145 14 1 3.7625 -6.7551 5.1788 15 6 2.1912 -7.9699 5.9609 16 7 3.0064 -8.7556 6.6299 17 14 0.3479 -8.2672 6.0220 18 1 -0.0412 -9.1902 4.9257 19 1 -0.0128 -8.8717 7.3295 20 1 -0.3674 -6.9760 5.8594 21 1 -0.3633 0.0775 1.0247 22 1 -0.3634 0.8486 -0.5796 23 1 -0.3634 -0.9263 -0.4452 24 1 3.1715 -0.8755 -1.2680 25 1 1.6113 -1.8591 -1.2674 26 1 0.7943 -2.7207 0.7311 27 1 0.6679 -1.6469 2.1450 28 1 3.2635 -5.4417 3.0169 29 1 3.1372 -4.3685 4.4312 30 1 1.0729 -5.5445 5.1401 31 1 1.1987 -6.6180 3.7260 32 1 2.6507 -9.4896 7.1547 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308318850.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:16 Heat of formation + Delta-G solvation = -84.577550 kcal Electronic energy + Delta-G solvation = -13550.013812 eV Core-core repulsion = 11089.907483 eV Total energy + Delta-G solvation = -2460.106329 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.12044 -38.14958 -36.07433 -33.31035 -31.02156 -30.02279 -28.39357 -25.18374 -22.14630 -21.15643 -20.58813 -19.29149 -17.58384 -16.79151 -16.28700 -16.04495 -15.02333 -14.26196 -14.02543 -13.97655 -13.38287 -12.90902 -12.78263 -12.39240 -12.25406 -11.73384 -11.46968 -11.44520 -11.24430 -10.69078 -10.55537 -10.12975 -10.06061 -9.95534 -9.82180 -9.68721 -9.34591 -8.62476 -6.12970 -4.14195 2.55141 3.08038 3.27768 3.35050 3.39552 3.60554 4.38505 4.44146 4.65360 4.65613 4.97819 5.06630 5.20573 5.31969 5.42107 5.49465 5.57830 5.60023 5.70932 5.79922 5.98471 5.98789 6.05380 6.13710 6.46263 6.82983 7.20509 7.22997 7.62623 8.17430 8.39870 8.88759 9.46613 10.99660 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.063993 B = 0.005154 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.440320 B = 5431.259497 C = 5760.249793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.152 4.152 3 H 0.105 0.895 4 C -0.174 4.174 5 C -0.143 4.143 6 H 0.119 0.881 7 C -0.084 4.084 8 C 0.457 3.543 9 O -0.514 6.514 10 O -0.363 6.363 11 C 0.082 3.918 12 C -0.010 4.010 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.882 3.118 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 15.466 -12.591 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 H 0.123 0.877 4 C -0.211 4.211 5 C -0.161 4.161 6 H 0.137 0.863 7 C -0.121 4.121 8 C 0.300 3.700 9 O -0.403 6.403 10 O -0.280 6.280 11 C 0.010 3.990 12 C -0.047 4.047 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.708 3.292 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.188 1.188 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.170 15.301 -12.432 20.658 hybrid contribution -0.645 -0.364 0.157 0.757 sum -6.815 14.938 -12.274 20.500 Atomic orbital electron populations 1.21390 0.92795 1.02067 1.02063 1.22419 0.95434 0.94483 1.04667 0.87698 1.23200 1.02557 1.01380 0.93946 1.22191 1.01305 0.98540 0.94069 0.86289 1.20861 0.97388 0.94675 0.99183 1.23466 0.88161 0.80615 0.77784 1.90625 1.16669 1.71682 1.61374 1.86480 1.43469 1.39956 1.58096 1.23365 0.91945 0.90168 0.93563 1.19624 0.96787 0.92892 0.95397 1.20855 0.94812 1.12142 1.28769 0.90661 1.24939 0.98163 0.95299 0.94607 1.69895 1.34984 1.17792 1.30871 0.86744 0.85765 0.79050 0.77602 1.20050 1.21156 1.18773 0.91932 0.92181 0.92313 0.88700 0.88636 0.87906 0.87537 0.91761 0.91734 0.95393 0.95831 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.15 -1.30 6.41 -90.62 -0.58 -1.88 16 3 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.17 -1.63 9.82 -26.72 -0.26 -1.89 16 5 C -0.14 -1.57 5.41 -90.62 -0.49 -2.06 16 6 H 0.12 1.51 7.31 -51.93 -0.38 1.13 16 7 C -0.08 -0.97 5.17 -27.89 -0.14 -1.12 16 8 C 0.46 7.69 7.96 36.01 0.29 7.98 16 9 O -0.51 -10.08 15.31 -18.75 -0.29 -10.37 16 10 O -0.36 -6.97 10.22 -39.27 -0.40 -7.37 16 11 C 0.08 1.79 5.40 37.16 0.20 1.99 16 12 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 16 13 C -0.53 -15.15 9.66 -34.44 -0.33 -15.49 16 14 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 17 Si 0.88 21.48 27.47 -169.99 -4.67 16.82 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 21 H 0.06 0.44 7.83 -51.93 -0.41 0.03 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.41 7.90 -51.92 -0.41 0.00 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 26 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 27 H 0.11 1.05 7.77 -51.93 -0.40 0.65 16 28 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 29 H 0.06 1.42 8.13 -51.93 -0.42 0.99 16 30 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 31 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -31.59 275.02 -6.53 -38.12 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.89 Total: -3.22 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.20 Total: -11.38 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.69 Total: -17.74 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.59 -6.53 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308318850.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.460 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds