Wall clock time and date at job start Mon Mar 30 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99586 * 3 2 1 5 5 H 1.48509 * 109.46780 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99527 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 N 1.46899 * 109.46987 * 179.97438 * 14 12 11 16 16 C 1.47478 * 111.00590 * 74.02290 * 15 14 12 17 17 C 1.53510 * 87.93574 * 138.70226 * 16 15 14 18 18 C 1.47486 * 111.00363 * 169.99692 * 15 14 12 19 19 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 21 21 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 22 22 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 23 23 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 24 24 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 25 25 H 1.09003 * 109.47112 * 299.99065 * 14 12 11 26 26 H 1.08993 * 109.47916 * 59.99687 * 14 12 11 27 27 H 1.09001 * 113.48157 * 253.47540 * 16 15 14 28 28 H 1.09006 * 113.47263 * 23.94301 * 16 15 14 29 29 H 1.08998 * 114.17689 * 220.33160 * 17 16 15 30 30 H 1.09003 * 114.33927 * 87.63382 * 17 16 15 31 31 H 1.08994 * 113.47288 * 336.06232 * 18 15 14 32 32 H 1.08999 * 113.46996 * 106.52614 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.3998 -6.0978 0.0059 14 6 1.4335 -7.4030 0.0111 15 7 2.3882 -8.5195 0.0159 16 6 3.0197 -8.6694 1.3402 17 6 2.8690 -10.1885 1.1786 18 6 1.7011 -9.8014 0.2606 19 1 -0.4850 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8897 21 1 0.6242 -2.5567 0.8904 22 1 2.8722 -3.6042 0.8906 23 1 2.8722 -3.6042 -0.8894 24 1 0.5430 -4.9308 0.0000 25 1 0.8066 -7.4568 0.9012 26 1 0.8072 -7.4649 -0.8788 27 1 4.0572 -8.3363 1.3668 28 1 2.4233 -8.2582 2.1547 29 1 2.5682 -10.7066 2.0891 30 1 3.7004 -10.6702 0.6639 31 1 0.7529 -9.6923 0.7868 32 1 1.6212 -10.4276 -0.6280 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308394806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:06 Heat of formation + Delta-G solvation = -8.877064 kcal Electronic energy + Delta-G solvation = -13670.972441 eV Core-core repulsion = 11246.441482 eV Total energy + Delta-G solvation = -2424.530959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.33563 -38.52812 -34.79713 -32.84716 -31.24267 -29.42901 -26.01835 -25.65565 -24.01785 -21.00626 -20.14609 -19.92163 -16.91996 -16.48178 -16.09388 -15.90108 -15.07000 -14.62167 -14.47033 -13.98573 -13.40948 -12.84578 -12.59992 -12.30619 -12.13977 -11.63739 -11.20717 -11.11224 -11.02402 -10.73481 -10.63931 -10.31715 -9.77688 -9.44612 -9.19359 -8.92098 -8.52891 -8.33956 -6.09807 -4.12645 3.03719 3.29486 3.35322 3.39068 3.50592 4.04475 4.35738 4.42715 4.66333 4.99395 5.14218 5.18302 5.26831 5.27297 5.33726 5.45618 5.60368 5.77932 5.99761 6.18016 6.34639 6.35748 6.74449 6.85429 6.95010 7.51686 7.61334 7.88597 8.04076 8.28054 8.70079 8.93486 9.52299 11.01835 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.093309 B = 0.004776 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.006660 B = 5860.803110 C = 6038.872170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.725 5.725 12 C 0.506 3.494 13 O -0.534 6.534 14 C -0.003 4.003 15 N -0.452 5.452 16 C 0.005 3.995 17 C -0.148 4.148 18 C -0.006 4.006 19 H 0.262 0.738 20 H 0.022 0.978 21 H 0.022 0.978 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.396 0.604 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 -17.048 2.232 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.376 5.376 12 C 0.290 3.710 13 O -0.411 6.411 14 C -0.134 4.134 15 N -0.175 5.175 16 C -0.124 4.124 17 C -0.186 4.186 18 C -0.135 4.135 19 H 0.072 0.928 20 H 0.041 0.959 21 H 0.040 0.960 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.230 0.770 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.887 -16.763 1.614 16.864 hybrid contribution -0.798 1.054 0.648 1.472 sum 0.089 -15.709 2.261 15.871 Atomic orbital electron populations 1.69954 1.06103 1.26878 1.50442 1.24996 0.94890 0.99417 0.94965 0.86508 0.79844 0.82967 0.78225 1.20533 1.21157 1.19713 1.21062 0.93265 0.90408 1.51305 0.92247 1.19326 0.94210 0.91159 0.97804 1.21699 0.96014 0.81492 1.00715 1.46327 1.10444 1.06546 1.74319 1.20321 0.88391 0.85126 0.77149 1.90673 1.13762 1.87511 1.49148 1.22654 0.95655 0.91799 1.03329 1.68898 1.19298 1.00206 1.29068 1.23730 1.02475 0.95239 0.90958 1.23121 0.99048 0.96591 0.99796 1.23849 0.96762 0.92950 0.99899 0.92844 0.95940 0.95986 0.92694 0.92601 0.77032 0.91422 0.87853 0.89098 0.91605 0.90724 0.88899 0.91353 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.67 5.61 -4.04 -0.02 2.65 16 11 N -0.73 -12.85 5.56 -60.29 -0.33 -13.19 16 12 C 0.51 8.83 7.67 -10.99 -0.08 8.75 16 13 O -0.53 -11.46 15.76 5.55 0.09 -11.38 16 14 C 0.00 -0.03 5.31 -4.98 -0.03 -0.06 16 15 N -0.45 -5.97 6.06 -246.12 -1.49 -7.46 16 16 C 0.00 0.06 6.71 -7.55 -0.05 0.01 16 17 C -0.15 -1.32 8.47 -26.20 -0.22 -1.55 16 18 C -0.01 -0.05 7.70 -7.54 -0.06 -0.11 16 19 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 20 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 1.24 8.14 -51.92 -0.42 0.82 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.40 5.97 8.47 -40.82 -0.35 5.63 16 25 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 26 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.54 7.77 -51.93 -0.40 0.14 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -32.29 273.49 -7.81 -40.10 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.89 Total: 0.34 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.02 Total: -3.49 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.09 Total: -46.15 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.29 -7.81 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308394806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.220 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds