Wall clock time and date at job start Mon Mar 30 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99586 * 3 2 1 5 5 H 1.48509 * 109.46780 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99527 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 N 1.46899 * 109.46987 * 179.97438 * 14 12 11 16 16 C 1.47478 * 111.00590 * 74.02290 * 15 14 12 17 17 C 1.53510 * 87.93574 * 138.70226 * 16 15 14 18 18 C 1.47486 * 111.00363 * 169.99692 * 15 14 12 19 19 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 21 21 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 22 22 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 23 23 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 24 24 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 25 25 H 1.09003 * 109.47112 * 299.99065 * 14 12 11 26 26 H 1.08993 * 109.47916 * 59.99687 * 14 12 11 27 27 H 1.09001 * 113.48157 * 253.47540 * 16 15 14 28 28 H 1.09006 * 113.47263 * 23.94301 * 16 15 14 29 29 H 1.08998 * 114.17689 * 220.33160 * 17 16 15 30 30 H 1.09003 * 114.33927 * 87.63382 * 17 16 15 31 31 H 1.08994 * 113.47288 * 336.06232 * 18 15 14 32 32 H 1.08999 * 113.46996 * 106.52614 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.3998 -6.0978 0.0059 14 6 1.4335 -7.4030 0.0111 15 7 2.3882 -8.5195 0.0159 16 6 3.0197 -8.6694 1.3402 17 6 2.8690 -10.1885 1.1786 18 6 1.7011 -9.8014 0.2606 19 1 -0.4850 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8897 21 1 0.6242 -2.5567 0.8904 22 1 2.8722 -3.6042 0.8906 23 1 2.8722 -3.6042 -0.8894 24 1 0.5430 -4.9308 0.0000 25 1 0.8066 -7.4568 0.9012 26 1 0.8072 -7.4649 -0.8788 27 1 4.0572 -8.3363 1.3668 28 1 2.4233 -8.2582 2.1547 29 1 2.5682 -10.7066 2.0891 30 1 3.7004 -10.6702 0.6639 31 1 0.7529 -9.6923 0.7868 32 1 1.6212 -10.4276 -0.6280 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308394806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:06 Heat of formation + Delta-G solvation = -34.146384 kcal Electronic energy + Delta-G solvation = -13672.068201 eV Core-core repulsion = 11246.441482 eV Total energy + Delta-G solvation = -2425.626718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37226 -39.83023 -36.56228 -34.82340 -32.48735 -31.10038 -27.28682 -26.75724 -25.52146 -22.88311 -21.51173 -20.77500 -18.62774 -18.05883 -17.33106 -16.95535 -16.50153 -16.31211 -15.97262 -15.34689 -14.88353 -14.33010 -14.09872 -13.55721 -13.24498 -13.16463 -12.92885 -12.55624 -12.38635 -12.24155 -11.93785 -11.69893 -11.55596 -11.46109 -10.75973 -10.61846 -10.03801 -9.81937 -8.25706 -6.36383 1.41015 1.41477 1.53022 1.65999 2.17839 2.42799 3.09020 3.12420 3.56078 3.78065 3.96510 4.24205 4.30069 4.41349 4.47126 4.49868 4.50640 4.75428 4.82859 4.85419 4.99674 5.25826 5.28202 5.31800 5.48302 5.56115 5.76926 6.00458 6.14756 6.65373 6.76726 7.30921 7.33148 8.86142 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.093309 B = 0.004776 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.006660 B = 5860.803110 C = 6038.872170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.719 5.719 12 C 0.502 3.498 13 O -0.579 6.579 14 C 0.008 3.992 15 N -0.488 5.488 16 C -0.005 4.005 17 C -0.134 4.134 18 C 0.002 3.998 19 H 0.266 0.734 20 H 0.009 0.991 21 H 0.010 0.990 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.411 0.589 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -17.955 2.454 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.372 5.372 12 C 0.290 3.710 13 O -0.458 6.458 14 C -0.123 4.123 15 N -0.211 5.211 16 C -0.134 4.134 17 C -0.171 4.171 18 C -0.127 4.127 19 H 0.075 0.925 20 H 0.027 0.973 21 H 0.028 0.972 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.247 0.753 25 H 0.115 0.885 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.221 -17.699 1.835 17.795 hybrid contribution -0.603 1.300 0.576 1.545 sum -0.382 -16.399 2.411 16.579 Atomic orbital electron populations 1.70050 1.07518 1.28057 1.50933 1.25860 0.95800 1.03062 0.94313 0.85447 0.78621 0.78440 0.78556 1.19744 1.20348 1.19139 1.21473 0.93543 0.92044 1.51712 0.92487 1.19132 0.94188 0.91687 0.96408 1.21176 0.95045 0.82483 0.99482 1.46149 1.11105 1.05514 1.74390 1.21233 0.88119 0.86300 0.75393 1.90655 1.15995 1.88195 1.50985 1.22653 0.95257 0.88746 1.05693 1.68889 1.20693 1.01713 1.29833 1.23775 1.00843 0.97782 0.90966 1.23082 0.98948 0.94348 1.00758 1.23921 0.97440 0.90720 1.00574 0.92475 0.97257 0.97172 0.93848 0.93975 0.75285 0.88522 0.85645 0.92184 0.90967 0.88298 0.89083 0.89181 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.27 5.61 86.38 0.48 6.76 16 11 N -0.72 -25.19 5.56 -463.05 -2.57 -27.76 16 12 C 0.50 17.25 7.67 87.66 0.67 17.92 16 13 O -0.58 -25.22 15.76 -3.04 -0.05 -25.26 16 14 C 0.01 0.18 5.31 85.56 0.45 0.63 16 15 N -0.49 -12.03 6.06 -932.58 -5.65 -17.69 16 16 C 0.00 -0.11 6.71 83.58 0.56 0.45 16 17 C -0.13 -2.07 8.47 30.94 0.26 -1.81 16 18 C 0.00 0.02 7.70 83.57 0.64 0.67 16 19 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 20 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 21 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 22 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.41 11.95 8.47 -92.71 -0.79 11.16 16 25 H 0.10 1.71 7.56 -2.39 -0.02 1.69 16 26 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 28 H 0.07 1.53 7.70 -2.38 -0.02 1.51 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.03 7.77 -2.39 -0.02 1.01 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.90 273.49 -1.73 -71.62 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.31 Total: 11.26 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 3.93 Total: -3.94 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -7.94 Total: -99.55 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.90 -1.73 -71.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308394806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.477 kcal (2) G-P(sol) polarization free energy of solvation -69.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds