Wall clock time and date at job start Mon Mar 30 2020 02:34:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53003 * 109.47269 * 2 1
4 4 H 1.09004 * 109.46600 * 304.99740 * 3 2 1
5 5 C 1.50696 * 109.46796 * 184.99781 * 3 2 1
6 6 H 1.08005 * 119.99570 * 239.99709 * 5 3 2
7 7 C 1.37877 * 120.00185 * 60.00175 * 5 3 2
8 8 N 1.31512 * 119.99809 * 359.97438 * 7 5 3
9 9 Si 1.86798 * 119.99878 * 179.97438 * 7 5 3
10 10 H 1.48496 * 109.47396 * 60.00127 * 9 7 5
11 11 H 1.48504 * 109.46908 * 180.02562 * 9 7 5
12 12 H 1.48505 * 109.47297 * 299.99875 * 9 7 5
13 13 O 1.45200 * 109.46832 * 64.99539 * 3 2 1
14 14 C 1.34225 * 117.00401 * 269.99925 * 13 3 2
15 15 O 1.20826 * 119.99751 * 0.02562 * 14 13 3
16 16 C 1.50697 * 120.00155 * 180.02562 * 14 13 3
17 17 H 1.09002 * 115.54932 * 34.41776 * 16 14 13
18 18 C 1.53000 * 117.50034 * 248.74712 * 16 14 13
19 19 C 1.53002 * 117.49992 * 180.08939 * 16 14 13
20 20 H 1.09000 * 117.49996 * 215.00670 * 19 16 14
21 21 C 1.53000 * 117.49499 * 359.97438 * 19 16 14
22 22 H 1.09002 * 109.47109 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.47340 * 300.00404 * 1 2 3
24 24 H 1.09003 * 109.46879 * 60.00477 * 1 2 3
25 25 H 1.09003 * 109.47340 * 239.99596 * 2 1 3
26 26 H 1.09003 * 109.46879 * 119.99522 * 2 1 3
27 27 H 0.97000 * 120.00067 * 180.02562 * 8 7 5
28 28 H 1.09008 * 117.49673 * 359.97438 * 18 16 14
29 29 H 1.08999 * 117.49959 * 144.99344 * 18 16 14
30 30 H 1.09003 * 109.47376 * 60.00790 * 21 19 16
31 31 H 1.09006 * 109.46992 * 179.97438 * 21 19 16
32 32 H 1.08999 * 109.47689 * 299.99648 * 21 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8419
5 6 3.5419 1.4442 -0.1238
6 1 4.1472 1.8888 0.6524
7 6 4.1433 0.8783 -1.2279
8 7 3.4062 0.3365 -2.1728
9 14 6.0050 0.8810 -1.3816
10 1 6.5975 0.1470 -0.2347
11 1 6.3978 0.2175 -2.6507
12 1 6.4996 2.2813 -1.3819
13 8 1.6558 2.0917 1.2407
14 6 0.4727 2.7254 1.2559
15 8 -0.2192 2.7370 0.2655
16 6 0.0074 3.4226 2.5083
17 1 0.7918 3.8823 3.1095
18 6 -1.1892 2.8214 3.2484
19 6 -1.3510 4.1251 2.4627
20 1 -1.4603 5.0470 3.0338
21 6 -2.1327 4.0665 1.1487
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8901
25 1 1.8934 -0.5139 -0.8900
26 1 1.8933 -0.5138 0.8901
27 1 3.8293 -0.0620 -2.9494
28 1 -1.6401 1.9219 2.8292
29 1 -1.1920 2.8856 4.3365
30 1 -2.3376 3.0267 0.8938
31 1 -3.0740 4.6046 1.2616
32 1 -1.5441 4.5261 0.3548
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308397563.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:34:56
Heat of formation + Delta-G solvation = -76.392852 kcal
Electronic energy + Delta-G solvation = -14604.201015 eV
Core-core repulsion = 12144.449601 eV
Total energy + Delta-G solvation = -2459.751414 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.120 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.89808 -37.26588 -35.20151 -33.46199 -31.34021 -28.53902 -27.27346 -24.53773
-22.95626 -21.09992 -20.06033 -19.10856 -17.06551 -16.59995 -15.52012 -15.11613
-14.70508 -14.42510 -13.21902 -12.94949 -12.76790 -12.43588 -12.11258 -12.02204
-11.45433 -11.36837 -11.23166 -11.14508 -10.93026 -10.63787 -10.25960 -10.10528
-9.93290 -9.75329 -9.40113 -9.20611 -8.77483 -8.43039 -6.16826 -4.23816
2.89804 3.27053 3.30438 3.32828 3.64727 4.00171 4.34828 4.76962
4.98383 5.13310 5.17449 5.44266 5.66676 5.85495 5.95688 6.09346
6.13639 6.24773 6.25833 6.31612 6.47515 6.67823 6.90260 6.99306
7.18955 7.31195 7.64054 7.76557 7.99454 8.19138 8.69725 8.95307
9.41476 10.89902
Molecular weight = 212.12amu
Principal moments of inertia in cm(-1)
A = 0.049360 B = 0.008145 C = 0.007682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 567.123480 B = 3436.720142 C = 3643.980260
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.135 4.135
3 C 0.222 3.778
4 H 0.047 0.953
5 C -0.522 4.522
6 H 0.067 0.933
7 C 0.063 3.937
8 N -0.888 5.888
9 Si 0.911 3.089
10 H -0.274 1.274
11 H -0.285 1.285
12 H -0.275 1.275
13 O -0.354 6.354
14 C 0.480 3.520
15 O -0.512 6.512
16 C -0.166 4.166
17 H 0.128 0.872
18 C -0.152 4.152
19 C -0.123 4.123
20 H 0.111 0.889
21 C -0.113 4.113
22 H 0.032 0.968
23 H 0.031 0.969
24 H 0.053 0.947
25 H 0.108 0.892
26 H 0.041 0.959
27 H 0.267 0.733
28 H 0.099 0.901
29 H 0.103 0.897
30 H 0.065 0.935
31 H 0.046 0.954
32 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.107 4.001 7.856 11.324
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.173 4.173
3 C 0.169 3.831
4 H 0.065 0.935
5 C -0.560 4.560
6 H 0.086 0.914
7 C -0.139 4.139
8 N -0.526 5.526
9 Si 0.738 3.262
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.200 1.200
13 O -0.270 6.270
14 C 0.324 3.676
15 O -0.403 6.403
16 C -0.185 4.185
17 H 0.145 0.855
18 C -0.189 4.189
19 C -0.141 4.141
20 H 0.129 0.871
21 C -0.170 4.170
22 H 0.051 0.949
23 H 0.050 0.950
24 H 0.072 0.928
25 H 0.126 0.874
26 H 0.060 0.940
27 H 0.076 0.924
28 H 0.118 0.882
29 H 0.122 0.878
30 H 0.084 0.916
31 H 0.065 0.935
32 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -7.247 3.866 7.340 11.016
hybrid contribution 1.047 -0.108 -0.162 1.065
sum -6.200 3.758 7.178 10.203
Atomic orbital electron populations
1.21854 0.98421 0.98902 1.00709 1.22012 0.92615 0.99421 1.03286
1.20649 0.94917 0.88748 0.78759 0.93549 1.21025 0.89799 1.38965
1.06215 0.91433 1.24882 0.99214 0.94778 0.95063 1.69880 1.35444
1.37814 1.09492 0.86345 0.83931 0.78474 0.77456 1.19944 1.21020
1.20012 1.86459 1.34355 1.62268 1.43953 1.22204 0.80708 0.76542
0.88178 1.90596 1.55362 1.58598 1.35721 1.21861 0.93399 1.05319
0.97927 0.85458 1.23101 0.99074 0.97845 0.98902 1.22435 0.95754
0.96250 0.99663 0.87144 1.21394 0.97918 1.02934 0.94745 0.94905
0.94962 0.92833 0.87384 0.94048 0.92357 0.88238 0.87847 0.91627
0.93514 0.91187
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.13 8.57 37.16 0.32 -2.81 16
2 C -0.14 -3.41 5.49 -26.73 -0.15 -3.56 16
3 C 0.22 5.98 2.25 -27.88 -0.06 5.92 16
4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16
5 C -0.52 -14.83 8.90 -34.44 -0.31 -15.13 16
6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16
7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16
8 N -0.89 -25.29 11.29 55.43 0.63 -24.66 16
9 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16
10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
13 O -0.35 -8.64 9.81 -39.25 -0.38 -9.02 16
14 C 0.48 10.13 6.18 36.00 0.22 10.36 16
15 O -0.51 -11.58 10.26 -18.75 -0.19 -11.77 16
16 C -0.17 -2.61 6.30 -91.77 -0.58 -3.18 16
17 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16
18 C -0.15 -1.94 9.88 -26.70 -0.26 -2.21 16
19 C -0.12 -1.60 6.41 -90.58 -0.58 -2.18 16
20 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16
21 C -0.11 -1.61 8.43 37.16 0.31 -1.30 16
22 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
23 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16
24 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16
25 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16
26 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16
27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16
28 H 0.10 1.35 8.05 -51.92 -0.42 0.94 16
29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16
30 H 0.06 1.04 7.02 -51.93 -0.36 0.68 16
31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.07 1.13 7.26 -51.93 -0.38 0.76 16
LS Contribution 264.17 15.07 3.98 3.98
Total: -1.00 -29.70 264.17 -6.81 -36.51
By element:
Atomic # 1 Polarization: 5.88 SS G_CDS: -4.64 Total: 1.23 kcal
Atomic # 6 Polarization: -11.28 SS G_CDS: -1.18 Total: -12.46 kcal
Atomic # 7 Polarization: -25.29 SS G_CDS: 0.63 Total: -24.66 kcal
Atomic # 8 Polarization: -20.22 SS G_CDS: -0.58 Total: -20.79 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -29.70 -6.81 -36.51 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308397563.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.887 kcal
(2) G-P(sol) polarization free energy of solvation -29.695 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds