Wall clock time and date at job start Mon Mar 30 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47269 * 2 1 4 4 H 1.09004 * 109.46600 * 304.99740 * 3 2 1 5 5 C 1.50696 * 109.46796 * 184.99781 * 3 2 1 6 6 H 1.08005 * 119.99570 * 239.99709 * 5 3 2 7 7 C 1.37877 * 120.00185 * 60.00175 * 5 3 2 8 8 N 1.31512 * 119.99809 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99878 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47396 * 60.00127 * 9 7 5 11 11 H 1.48504 * 109.46908 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47297 * 299.99875 * 9 7 5 13 13 O 1.45200 * 109.46832 * 64.99539 * 3 2 1 14 14 C 1.34225 * 117.00401 * 269.99925 * 13 3 2 15 15 O 1.20826 * 119.99751 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00155 * 180.02562 * 14 13 3 17 17 H 1.09002 * 115.54932 * 34.41776 * 16 14 13 18 18 C 1.53000 * 117.50034 * 248.74712 * 16 14 13 19 19 C 1.53002 * 117.49992 * 180.08939 * 16 14 13 20 20 H 1.09000 * 117.49996 * 215.00670 * 19 16 14 21 21 C 1.53000 * 117.49499 * 359.97438 * 19 16 14 22 22 H 1.09002 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47340 * 300.00404 * 1 2 3 24 24 H 1.09003 * 109.46879 * 60.00477 * 1 2 3 25 25 H 1.09003 * 109.47340 * 239.99596 * 2 1 3 26 26 H 1.09003 * 109.46879 * 119.99522 * 2 1 3 27 27 H 0.97000 * 120.00067 * 180.02562 * 8 7 5 28 28 H 1.09008 * 117.49673 * 359.97438 * 18 16 14 29 29 H 1.08999 * 117.49959 * 144.99344 * 18 16 14 30 30 H 1.09003 * 109.47376 * 60.00790 * 21 19 16 31 31 H 1.09006 * 109.46992 * 179.97438 * 21 19 16 32 32 H 1.08999 * 109.47689 * 299.99648 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3816 10 1 6.5975 0.1470 -0.2347 11 1 6.3978 0.2175 -2.6507 12 1 6.4996 2.2813 -1.3819 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7254 1.2559 15 8 -0.2192 2.7370 0.2655 16 6 0.0074 3.4226 2.5083 17 1 0.7918 3.8823 3.1095 18 6 -1.1892 2.8214 3.2484 19 6 -1.3510 4.1251 2.4627 20 1 -1.4603 5.0470 3.0338 21 6 -2.1327 4.0665 1.1487 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.8293 -0.0620 -2.9494 28 1 -1.6401 1.9219 2.8292 29 1 -1.1920 2.8856 4.3365 30 1 -2.3376 3.0267 0.8938 31 1 -3.0740 4.6046 1.2616 32 1 -1.5441 4.5261 0.3548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308397563.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:56 Heat of formation + Delta-G solvation = -76.392852 kcal Electronic energy + Delta-G solvation = -14604.201015 eV Core-core repulsion = 12144.449601 eV Total energy + Delta-G solvation = -2459.751414 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.89808 -37.26588 -35.20151 -33.46199 -31.34021 -28.53902 -27.27346 -24.53773 -22.95626 -21.09992 -20.06033 -19.10856 -17.06551 -16.59995 -15.52012 -15.11613 -14.70508 -14.42510 -13.21902 -12.94949 -12.76790 -12.43588 -12.11258 -12.02204 -11.45433 -11.36837 -11.23166 -11.14508 -10.93026 -10.63787 -10.25960 -10.10528 -9.93290 -9.75329 -9.40113 -9.20611 -8.77483 -8.43039 -6.16826 -4.23816 2.89804 3.27053 3.30438 3.32828 3.64727 4.00171 4.34828 4.76962 4.98383 5.13310 5.17449 5.44266 5.66676 5.85495 5.95688 6.09346 6.13639 6.24773 6.25833 6.31612 6.47515 6.67823 6.90260 6.99306 7.18955 7.31195 7.64054 7.76557 7.99454 8.19138 8.69725 8.95307 9.41476 10.89902 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.049360 B = 0.008145 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.123480 B = 3436.720142 C = 3643.980260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.354 6.354 14 C 0.480 3.520 15 O -0.512 6.512 16 C -0.166 4.166 17 H 0.128 0.872 18 C -0.152 4.152 19 C -0.123 4.123 20 H 0.111 0.889 21 C -0.113 4.113 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.041 0.959 27 H 0.267 0.733 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 4.001 7.856 11.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.270 6.270 14 C 0.324 3.676 15 O -0.403 6.403 16 C -0.185 4.185 17 H 0.145 0.855 18 C -0.189 4.189 19 C -0.141 4.141 20 H 0.129 0.871 21 C -0.170 4.170 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.247 3.866 7.340 11.016 hybrid contribution 1.047 -0.108 -0.162 1.065 sum -6.200 3.758 7.178 10.203 Atomic orbital electron populations 1.21854 0.98421 0.98902 1.00709 1.22012 0.92615 0.99421 1.03286 1.20649 0.94917 0.88748 0.78759 0.93549 1.21025 0.89799 1.38965 1.06215 0.91433 1.24882 0.99214 0.94778 0.95063 1.69880 1.35444 1.37814 1.09492 0.86345 0.83931 0.78474 0.77456 1.19944 1.21020 1.20012 1.86459 1.34355 1.62268 1.43953 1.22204 0.80708 0.76542 0.88178 1.90596 1.55362 1.58598 1.35721 1.21861 0.93399 1.05319 0.97927 0.85458 1.23101 0.99074 0.97845 0.98902 1.22435 0.95754 0.96250 0.99663 0.87144 1.21394 0.97918 1.02934 0.94745 0.94905 0.94962 0.92833 0.87384 0.94048 0.92357 0.88238 0.87847 0.91627 0.93514 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.57 37.16 0.32 -2.81 16 2 C -0.14 -3.41 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 5.98 2.25 -27.88 -0.06 5.92 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.83 8.90 -34.44 -0.31 -15.13 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.29 11.29 55.43 0.63 -24.66 16 9 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 O -0.35 -8.64 9.81 -39.25 -0.38 -9.02 16 14 C 0.48 10.13 6.18 36.00 0.22 10.36 16 15 O -0.51 -11.58 10.26 -18.75 -0.19 -11.77 16 16 C -0.17 -2.61 6.30 -91.77 -0.58 -3.18 16 17 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 18 C -0.15 -1.94 9.88 -26.70 -0.26 -2.21 16 19 C -0.12 -1.60 6.41 -90.58 -0.58 -2.18 16 20 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.11 -1.61 8.43 37.16 0.31 -1.30 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 24 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 25 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.10 1.35 8.05 -51.92 -0.42 0.94 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.04 7.02 -51.93 -0.36 0.68 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.13 7.26 -51.93 -0.38 0.76 16 LS Contribution 264.17 15.07 3.98 3.98 Total: -1.00 -29.70 264.17 -6.81 -36.51 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.64 Total: 1.23 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -1.18 Total: -12.46 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.63 Total: -24.66 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.58 Total: -20.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.70 -6.81 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397563.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.887 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds