Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47163 * 269.99944 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.46705 * 150.00168 * 3 2 1 7 7 C 1.37876 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99995 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47245 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47176 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99544 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47059 * 180.02562 * 15 14 12 17 17 C 1.53004 * 117.49759 * 243.62370 * 16 15 14 18 18 C 1.52996 * 117.50145 * 175.00164 * 16 15 14 19 19 H 0.97001 * 119.99403 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.09003 * 109.46941 * 299.99607 * 9 7 2 22 22 H 1.00904 * 110.99923 * 56.04791 * 10 9 7 23 23 H 1.09001 * 109.46739 * 60.00281 * 11 10 9 24 24 H 1.09000 * 109.47767 * 300.00540 * 11 10 9 25 25 H 0.96994 * 119.99756 * 0.02562 * 14 12 11 26 26 H 1.08996 * 109.47366 * 299.99598 * 15 14 12 27 27 H 1.08992 * 109.47635 * 60.00246 * 15 14 12 28 28 H 1.09001 * 115.54850 * 29.32521 * 16 15 14 29 29 H 1.08996 * 117.49992 * 359.97438 * 17 16 15 30 30 H 1.09001 * 117.49660 * 145.01544 * 17 16 15 31 31 H 1.09007 * 117.49716 * 214.97980 * 18 16 15 32 32 H 1.08993 * 117.49910 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5792 -0.0010 11 6 5.4695 -2.6185 -0.0022 12 6 5.9337 -4.0523 -0.0014 13 8 5.1212 -4.9527 -0.0004 14 7 7.2517 -4.3339 -0.0017 15 6 7.7029 -5.7276 -0.0015 16 6 9.2324 -5.7686 -0.0013 17 6 9.9226 -6.3904 -1.2171 18 6 9.9024 -7.1390 0.1172 19 1 -0.4849 0.8401 -0.0004 20 1 3.8752 -0.6807 0.8888 21 1 3.8745 -0.6802 -0.8912 22 1 3.6253 -3.0957 -0.7821 23 1 5.8471 -2.1143 0.8874 24 1 5.8458 -2.1148 -0.8926 25 1 7.9015 -3.6137 -0.0021 26 1 7.3263 -6.2313 0.8887 27 1 7.3257 -6.2318 -0.8912 28 1 9.7252 -4.9241 0.4803 29 1 9.2870 -6.7706 -2.0168 30 1 10.8696 -5.9548 -1.5355 31 1 10.8363 -7.1959 0.6765 32 1 9.2536 -8.0113 0.1954 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308425742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = -12.905041 kcal Electronic energy + Delta-G solvation = -13374.995437 eV Core-core repulsion = 10950.289813 eV Total energy + Delta-G solvation = -2424.705625 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.54386 -37.72728 -35.09527 -34.04396 -32.33353 -29.05170 -27.08561 -24.41843 -22.72609 -21.21988 -21.11259 -20.11789 -17.25727 -16.53033 -16.46724 -15.61498 -15.20811 -14.45322 -14.26224 -14.00783 -13.45404 -13.38721 -12.90986 -12.38954 -11.88014 -11.73673 -11.71772 -11.60786 -10.84519 -10.74214 -10.58929 -10.48904 -9.86496 -9.53403 -9.23398 -9.00059 -8.59297 -7.50995 -6.04068 -4.02376 2.90495 3.11528 3.28305 3.35718 3.37377 3.50675 4.34307 4.42188 4.56420 4.63429 4.89098 5.08080 5.17862 5.28692 5.29544 5.44220 5.54716 5.58015 5.70205 5.72530 5.76948 5.88422 6.47545 6.69852 6.96677 7.49341 7.61710 7.86827 8.29815 8.46710 8.65591 9.05967 9.56704 11.09335 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.080841 B = 0.004638 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.276370 B = 6035.862238 C = 6284.803603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.081 0.919 9 C 0.165 3.835 10 N -0.664 5.664 11 C 0.040 3.960 12 C 0.512 3.488 13 O -0.522 6.522 14 N -0.738 5.738 15 C 0.151 3.849 16 C -0.169 4.169 17 C -0.178 4.178 18 C -0.172 4.172 19 H 0.264 0.736 20 H 0.028 0.972 21 H -0.019 1.019 22 H 0.346 0.654 23 H 0.094 0.906 24 H 0.049 0.951 25 H 0.399 0.601 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.667 -8.299 -1.284 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.297 5.297 11 C -0.093 4.093 12 C 0.298 3.702 13 O -0.396 6.396 14 N -0.393 5.393 15 C 0.028 3.972 16 C -0.187 4.187 17 C -0.215 4.215 18 C -0.210 4.210 19 H 0.074 0.926 20 H 0.046 0.954 21 H -0.001 1.001 22 H 0.164 0.836 23 H 0.112 0.888 24 H 0.067 0.933 25 H 0.233 0.767 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.823 -8.912 -0.597 22.658 hybrid contribution 1.002 1.586 -0.879 2.072 sum 21.825 -7.326 -1.475 23.069 Atomic orbital electron populations 1.69908 1.06162 1.26866 1.50879 1.24914 0.94781 0.98928 0.94771 0.86798 0.80286 0.83824 0.78395 1.20342 1.21119 1.19188 1.21052 0.88785 0.95008 1.50602 0.90090 1.20060 0.96969 0.84398 0.94835 1.60258 1.01956 1.16642 1.50812 1.21822 0.93547 0.91956 1.02024 1.20959 0.81585 0.92236 0.75414 1.90701 1.53132 1.48230 1.47544 1.46012 1.07545 1.08099 1.77595 1.20811 0.90723 0.83434 1.02278 1.22477 0.94487 0.98081 1.03661 1.23093 1.02565 1.04050 0.91775 1.22954 1.02515 0.94961 1.00525 0.92620 0.95398 1.00142 0.83573 0.88759 0.93346 0.76740 0.91206 0.91532 0.87201 0.88483 0.88685 0.88507 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -15.19 9.87 -34.44 -0.34 -15.53 16 8 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16 9 C 0.16 4.06 4.51 -4.97 -0.02 4.04 16 10 N -0.66 -14.68 6.11 -116.34 -0.71 -15.39 16 11 C 0.04 0.66 6.17 -4.98 -0.03 0.63 16 12 C 0.51 8.28 7.87 -10.98 -0.09 8.19 16 13 O -0.52 -10.73 16.20 5.56 0.09 -10.64 16 14 N -0.74 -8.51 5.56 -60.30 -0.33 -8.85 16 15 C 0.15 1.60 5.96 -4.04 -0.02 1.58 16 16 C -0.17 -1.29 5.85 -90.62 -0.53 -1.82 16 17 C -0.18 -1.22 10.18 -26.73 -0.27 -1.49 16 18 C -0.17 -1.16 10.25 -26.73 -0.27 -1.43 16 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 20 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 21 H -0.02 -0.45 7.57 -51.93 -0.39 -0.84 16 22 H 0.35 7.79 8.42 -39.29 -0.33 7.45 16 23 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.40 3.38 8.40 -40.82 -0.34 3.03 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 28 H 0.11 0.73 8.04 -51.93 -0.42 0.32 16 29 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 276.93 15.07 4.17 4.17 Total: -1.00 -33.93 276.93 -7.17 -41.09 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.81 Total: 3.95 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.68 Total: -3.93 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.27 Total: -51.54 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.93 -7.17 -41.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308425742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.190 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds