Wall clock time and date at job start Mon Mar 30 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47163 * 269.99944 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.46705 * 150.00168 * 3 2 1 7 7 C 1.37876 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99995 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47245 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47176 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99544 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47059 * 180.02562 * 15 14 12 17 17 C 1.53004 * 117.49759 * 243.62370 * 16 15 14 18 18 C 1.52996 * 117.50145 * 175.00164 * 16 15 14 19 19 H 0.97001 * 119.99403 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.09003 * 109.46941 * 299.99607 * 9 7 2 22 22 H 1.00904 * 110.99923 * 56.04791 * 10 9 7 23 23 H 1.09001 * 109.46739 * 60.00281 * 11 10 9 24 24 H 1.09000 * 109.47767 * 300.00540 * 11 10 9 25 25 H 0.96994 * 119.99756 * 0.02562 * 14 12 11 26 26 H 1.08996 * 109.47366 * 299.99598 * 15 14 12 27 27 H 1.08992 * 109.47635 * 60.00246 * 15 14 12 28 28 H 1.09001 * 115.54850 * 29.32521 * 16 15 14 29 29 H 1.08996 * 117.49992 * 359.97438 * 17 16 15 30 30 H 1.09001 * 117.49660 * 145.01544 * 17 16 15 31 31 H 1.09007 * 117.49716 * 214.97980 * 18 16 15 32 32 H 1.08993 * 117.49910 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5792 -0.0010 11 6 5.4695 -2.6185 -0.0022 12 6 5.9337 -4.0523 -0.0014 13 8 5.1212 -4.9527 -0.0004 14 7 7.2517 -4.3339 -0.0017 15 6 7.7029 -5.7276 -0.0015 16 6 9.2324 -5.7686 -0.0013 17 6 9.9226 -6.3904 -1.2171 18 6 9.9024 -7.1390 0.1172 19 1 -0.4849 0.8401 -0.0004 20 1 3.8752 -0.6807 0.8888 21 1 3.8745 -0.6802 -0.8912 22 1 3.6253 -3.0957 -0.7821 23 1 5.8471 -2.1143 0.8874 24 1 5.8458 -2.1148 -0.8926 25 1 7.9015 -3.6137 -0.0021 26 1 7.3263 -6.2313 0.8887 27 1 7.3257 -6.2318 -0.8912 28 1 9.7252 -4.9241 0.4803 29 1 9.2870 -6.7706 -2.0168 30 1 10.8696 -5.9548 -1.5355 31 1 10.8363 -7.1959 0.6765 32 1 9.2536 -8.0113 0.1954 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308425742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:42 Heat of formation + Delta-G solvation = -39.887890 kcal Electronic energy + Delta-G solvation = -13376.165501 eV Core-core repulsion = 10950.289813 eV Total energy + Delta-G solvation = -2425.875689 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76253 -38.47006 -36.80584 -35.14140 -34.47558 -30.68548 -28.45098 -25.92036 -23.24766 -23.07196 -22.01070 -21.24102 -19.09348 -18.00656 -17.50881 -16.92458 -16.45148 -16.06603 -15.35067 -15.23746 -14.95898 -14.61909 -14.37610 -14.14714 -13.52865 -13.08446 -12.64763 -12.48314 -12.38841 -12.35057 -11.77705 -11.56181 -11.44126 -11.14416 -10.81838 -10.77608 -10.05868 -9.18145 -8.28987 -6.35371 1.37386 1.41146 1.52343 1.64177 2.09495 2.36516 2.88649 3.04671 3.56075 3.71008 3.87105 4.00294 4.11809 4.27356 4.41658 4.43844 4.67673 4.72537 4.77893 4.81487 5.03791 5.04733 5.19841 5.26809 5.48579 5.50744 5.88538 6.45342 6.50673 6.67951 6.74387 7.28125 7.30441 8.88509 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.080841 B = 0.004638 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.276370 B = 6035.862238 C = 6284.803603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.241 1.241 7 C -0.536 4.536 8 H 0.027 0.973 9 C 0.177 3.823 10 N -0.687 5.687 11 C 0.040 3.960 12 C 0.512 3.488 13 O -0.576 6.576 14 N -0.714 5.714 15 C 0.150 3.850 16 C -0.171 4.171 17 C -0.175 4.175 18 C -0.170 4.170 19 H 0.268 0.732 20 H 0.037 0.963 21 H -0.002 1.002 22 H 0.337 0.663 23 H 0.117 0.883 24 H 0.080 0.920 25 H 0.418 0.582 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.124 -6.748 -1.302 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.164 1.164 7 C -0.574 4.574 8 H 0.046 0.954 9 C 0.049 3.951 10 N -0.319 5.319 11 C -0.093 4.093 12 C 0.299 3.701 13 O -0.455 6.455 14 N -0.368 5.368 15 C 0.027 3.973 16 C -0.189 4.189 17 C -0.212 4.212 18 C -0.207 4.207 19 H 0.077 0.923 20 H 0.055 0.945 21 H 0.015 0.985 22 H 0.155 0.845 23 H 0.134 0.866 24 H 0.097 0.903 25 H 0.255 0.745 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.360 -7.367 -0.613 25.457 hybrid contribution -0.084 0.972 -0.878 1.312 sum 24.276 -6.395 -1.491 25.148 Atomic orbital electron populations 1.70086 1.08526 1.28402 1.52141 1.26030 0.95763 1.03821 0.93837 0.85506 0.79472 0.77283 0.79341 1.18853 1.20814 1.16392 1.21364 0.91742 0.93329 1.51016 0.95416 1.19814 0.93543 0.86113 0.95650 1.60101 1.05730 1.15138 1.50934 1.21931 0.90127 0.92768 1.04425 1.20946 0.82589 0.91583 0.74984 1.90690 1.54854 1.49469 1.50469 1.45798 1.06332 1.09357 1.75315 1.20848 0.92996 0.82396 1.01094 1.22393 0.92181 0.99404 1.04914 1.23159 1.02883 1.03693 0.91488 1.23054 1.02860 0.94227 1.00587 0.92285 0.94539 0.98477 0.84533 0.86555 0.90256 0.74484 0.92574 0.92744 0.85503 0.89131 0.87174 0.86961 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.96 43.51 27.47 68.60 1.88 45.39 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 7 C -0.54 -32.29 9.87 25.60 0.25 -32.03 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 9 C 0.18 8.47 4.51 85.56 0.39 8.86 16 10 N -0.69 -30.09 6.11 -521.98 -3.19 -33.28 16 11 C 0.04 1.22 6.17 85.56 0.53 1.75 16 12 C 0.51 15.97 7.87 87.66 0.69 16.66 16 13 O -0.58 -24.07 16.20 -3.02 -0.05 -24.12 16 14 N -0.71 -14.97 5.56 -463.07 -2.57 -17.54 16 15 C 0.15 3.01 5.96 86.38 0.51 3.52 16 16 C -0.17 -2.19 5.85 -10.79 -0.06 -2.25 16 17 C -0.18 -1.99 10.18 30.60 0.31 -1.68 16 18 C -0.17 -1.91 10.25 30.59 0.31 -1.60 16 19 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 20 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 21 H 0.00 -0.11 7.57 -2.39 -0.02 -0.12 16 22 H 0.34 15.54 8.42 -89.69 -0.76 14.79 16 23 H 0.12 3.07 8.14 -2.39 -0.02 3.06 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.42 5.62 8.40 -92.71 -0.78 4.84 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.24 7.88 -2.39 -0.02 1.22 16 28 H 0.13 1.23 8.04 -2.39 -0.02 1.21 16 29 H 0.09 1.16 8.03 -2.39 -0.02 1.14 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.26 276.93 -0.71 -76.97 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.47 Total: 19.39 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 3.39 Total: -6.16 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -5.47 Total: -111.46 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.05 Total: -24.12 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -76.26 -0.71 -76.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308425742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.084 kcal (2) G-P(sol) polarization free energy of solvation -76.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds