Wall clock time and date at job start Mon Mar 30 2020 02:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48506 * 109.46828 * 269.99823 * 3 2 1 5 5 H 1.48508 * 109.47191 * 29.99599 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99648 * 3 2 1 7 7 C 1.38951 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99890 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99767 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46735 * 180.02562 * 12 10 9 14 14 N 1.46901 * 109.46769 * 180.02562 * 13 12 10 15 15 C 1.48534 * 111.00172 * 52.60936 * 14 13 12 16 16 C 1.54933 * 103.22824 * 159.71827 * 15 14 13 17 17 C 1.54594 * 102.92252 * 322.58255 * 16 15 14 18 18 C 1.47912 * 110.99681 * 170.00135 * 14 13 12 19 19 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 20 20 H 0.97005 * 120.00430 * 359.97438 * 9 7 2 21 21 H 1.09001 * 109.46797 * 60.00350 * 12 10 9 22 22 H 1.08992 * 109.47518 * 300.00347 * 12 10 9 23 23 H 1.09002 * 109.47398 * 300.00410 * 13 12 10 24 24 H 1.09001 * 109.47194 * 60.00591 * 13 12 10 25 25 H 1.08997 * 110.66294 * 278.15766 * 15 14 13 26 26 H 1.09001 * 110.66815 * 41.27720 * 15 14 13 27 27 H 1.09002 * 110.72385 * 204.22928 * 16 15 14 28 28 H 1.09000 * 110.72461 * 80.94436 * 16 15 14 29 29 H 1.08997 * 110.31096 * 263.04565 * 17 16 15 30 30 H 1.09001 * 110.30483 * 140.87303 * 17 16 15 31 31 H 1.08997 * 109.91505 * 333.51116 * 18 14 13 32 32 H 1.08999 * 109.91449 * 94.60846 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4002 5 1 1.4456 2.6528 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 6 2.2381 -6.0258 0.0016 14 7 1.5036 -7.2980 0.0016 15 6 0.5085 -7.3381 -1.1005 16 6 0.2370 -8.8531 -1.2779 17 6 1.6300 -9.4832 -1.0492 18 6 2.4164 -8.4370 -0.2377 19 1 -0.4850 0.8400 -0.0004 20 1 0.3534 -2.3906 0.0005 21 1 0.6169 -4.9208 -0.8887 22 1 0.6175 -4.9205 0.8912 23 1 2.8648 -5.9684 -0.8883 24 1 2.8647 -5.9677 0.8917 25 1 -0.4037 -6.8146 -0.8143 26 1 0.9273 -6.9129 -2.0126 27 1 -0.1216 -9.0653 -2.2852 28 1 -0.4740 -9.2076 -0.5316 29 1 2.1223 -9.6695 -2.0037 30 1 1.5377 -10.4100 -0.4829 31 1 3.2854 -8.1036 -0.8048 32 1 2.7351 -8.8635 0.7134 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379356972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:50 Heat of formation + Delta-G solvation = -45.420777 kcal Electronic energy + Delta-G solvation = -13907.257114 eV Core-core repulsion = 11481.141501 eV Total energy + Delta-G solvation = -2426.115613 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03653 -37.89572 -34.04829 -32.90140 -31.20717 -29.27015 -28.48159 -25.08073 -23.04225 -20.89545 -20.57688 -18.91253 -17.78923 -16.32074 -15.95462 -15.06261 -14.82308 -14.41721 -14.02669 -13.78877 -13.17648 -12.86959 -12.43449 -12.07638 -11.65286 -11.42939 -11.39524 -11.12827 -11.07134 -10.91795 -10.59799 -10.49176 -10.38254 -10.19597 -9.50759 -8.38011 -8.26705 -7.95860 -6.40642 -3.81548 3.18551 3.27039 3.33223 3.93375 4.05200 4.23656 4.65247 4.70915 4.92587 5.18399 5.26144 5.32380 5.48096 5.54837 5.62878 5.72152 5.74913 5.81030 5.96854 6.02258 6.05094 6.14551 6.36092 6.42024 6.53893 7.04043 7.21984 7.56185 8.06988 8.61829 9.18384 9.55988 10.07238 10.77086 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.078914 B = 0.005526 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.733126 B = 5066.063261 C = 5319.216486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.600 6.600 12 C -0.129 4.129 13 C 0.069 3.931 14 N -0.521 5.521 15 C 0.030 3.970 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.034 3.966 19 H 0.272 0.728 20 H 0.393 0.607 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 -13.972 -2.119 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.486 6.486 12 C -0.170 4.170 13 C -0.059 4.059 14 N -0.246 5.246 15 C -0.098 4.098 16 C -0.162 4.162 17 C -0.169 4.169 18 C -0.094 4.094 19 H 0.081 0.919 20 H 0.227 0.773 21 H 0.094 0.906 22 H 0.103 0.897 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.040 -13.826 -1.597 13.957 hybrid contribution 0.189 1.028 -0.794 1.313 sum -0.851 -12.798 -2.391 13.047 Atomic orbital electron populations 1.69617 1.05949 1.28167 1.50509 1.25272 0.95631 0.99738 0.97275 0.85857 0.79249 0.80793 0.78376 1.20413 1.20889 1.19406 1.19726 0.93396 0.82362 1.47630 0.87953 1.41904 1.09260 1.04672 1.63893 1.19907 0.88213 0.85041 0.84163 1.90506 1.14091 1.87524 1.56453 1.21500 0.98877 0.93452 1.03174 1.21954 0.94980 0.86819 1.02135 1.64843 1.13929 1.02958 1.42846 1.23275 0.97027 0.96279 0.93221 1.22485 0.97055 0.95196 1.01475 1.22396 0.96045 0.98584 0.99859 1.22856 0.94963 0.91846 0.99712 0.91855 0.77340 0.90629 0.89712 0.94068 0.90005 0.89789 0.93645 0.91319 0.90848 0.91743 0.91236 0.93716 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.58 9.68 -14.94 -0.14 -8.72 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.64 5.29 -10.96 -0.06 -14.70 16 10 C 0.44 10.74 7.78 -10.98 -0.09 10.65 16 11 O -0.60 -16.66 15.56 5.55 0.09 -16.58 16 12 C -0.13 -2.39 5.36 -27.88 -0.15 -2.54 16 13 C 0.07 1.20 4.32 -3.82 -0.02 1.18 16 14 N -0.52 -7.57 5.40 -230.44 -1.24 -8.81 16 15 C 0.03 0.38 5.10 -1.90 -0.01 0.37 16 16 C -0.12 -1.26 7.06 -24.87 -0.18 -1.44 16 17 C -0.13 -1.30 6.93 -25.37 -0.18 -1.48 16 18 C 0.03 0.42 6.70 -2.75 -0.02 0.41 16 19 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 20 H 0.39 9.80 7.90 -40.82 -0.32 9.47 16 21 H 0.08 1.27 6.79 -51.93 -0.35 0.92 16 22 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 23 H 0.04 0.76 7.77 -51.93 -0.40 0.35 16 24 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 25 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 26 H 0.05 0.60 8.00 -51.93 -0.42 0.18 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.57 7.57 -51.93 -0.39 0.17 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 266.70 15.07 4.02 4.02 Total: -1.00 -30.86 266.70 -7.12 -37.98 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.75 Total: 7.04 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.87 Total: -1.05 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.58 Total: -47.64 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.86 -7.12 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379356972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.442 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds