Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 115.55369 * 2 1 4 4 C 1.53075 * 117.49414 * 214.26591 * 2 1 3 5 5 C 1.53000 * 59.98657 * 252.51722 * 4 2 1 6 6 H 1.08991 * 117.49635 * 107.50052 * 5 4 2 7 7 C 1.50696 * 117.49919 * 252.49886 * 5 4 2 8 8 O 1.20835 * 120.00048 * 68.74431 * 7 5 4 9 9 O 1.34231 * 120.00076 * 248.74920 * 7 5 4 10 10 C 1.45196 * 117.00039 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47460 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47339 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 300.00306 * 16 14 12 19 19 H 1.48504 * 109.46636 * 59.99865 * 16 14 12 20 20 H 1.08999 * 109.47477 * 274.33480 * 1 2 3 21 21 H 1.09005 * 109.47074 * 34.33040 * 1 2 3 22 22 H 1.08994 * 109.47272 * 154.33049 * 1 2 3 23 23 H 1.08994 * 109.46896 * 205.67031 * 3 2 1 24 24 H 1.08996 * 109.46545 * 325.66868 * 3 2 1 25 25 H 1.08994 * 109.47004 * 85.66752 * 3 2 1 26 26 H 1.09007 * 117.51207 * 145.03650 * 4 2 1 27 27 H 1.09001 * 117.49127 * 0.02562 * 4 2 1 28 28 H 1.09003 * 109.47610 * 59.99596 * 10 9 7 29 29 H 1.08999 * 109.47595 * 299.99773 * 10 9 7 30 30 H 1.09005 * 109.46800 * 60.00463 * 11 10 9 31 31 H 1.08998 * 109.47382 * 300.00262 * 11 10 9 32 32 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2366 -1.1222 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 1.6111 -1.8578 1.2693 7 6 3.5291 -0.7807 1.4612 8 8 3.9693 0.3431 1.4027 9 8 4.1918 -1.7262 2.1458 10 6 5.4303 -1.3274 2.7903 11 6 6.0373 -2.5293 3.5166 12 6 7.3230 -2.1156 4.1850 13 1 7.6726 -1.0973 4.0998 14 6 8.0538 -3.0373 4.9044 15 7 7.6284 -4.2775 5.0076 16 14 9.6479 -2.5247 5.7322 17 1 10.2369 -3.6913 6.4373 18 1 10.6021 -2.0320 4.7066 19 1 9.3715 -1.4429 6.7114 20 1 -0.3634 0.0777 1.0247 21 1 -0.3633 0.8487 -0.5796 22 1 -0.3633 -0.9262 -0.4451 23 1 3.1823 1.3086 -0.4452 24 1 1.5810 2.0741 -0.5796 25 1 2.2766 1.7416 1.0247 26 1 3.1719 -0.8771 -1.2679 27 1 1.6112 -1.8597 -1.2675 28 1 5.2267 -0.5337 3.5091 29 1 6.1311 -0.9652 2.0381 30 1 6.2410 -3.3232 2.7980 31 1 5.3364 -2.8912 4.2689 32 1 8.1427 -4.9260 5.5134 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379363770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = -81.933017 kcal Electronic energy + Delta-G solvation = -13772.303955 eV Core-core repulsion = 11312.312302 eV Total energy + Delta-G solvation = -2459.991653 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.32680 -37.94890 -35.73259 -33.33080 -30.43516 -29.51092 -27.53208 -25.57313 -23.94662 -21.07974 -20.44391 -18.98951 -17.42786 -16.25079 -15.87405 -15.59741 -14.64824 -14.46962 -13.86203 -13.75829 -13.15886 -12.71925 -12.54236 -12.33765 -12.07837 -11.85483 -11.35261 -11.20911 -11.02986 -10.72565 -10.67769 -10.30257 -10.04841 -9.88223 -9.61126 -9.46771 -9.27987 -8.43270 -6.09446 -4.13943 2.46744 3.12854 3.30640 3.34600 3.38316 3.67481 4.39372 4.51286 4.66786 4.79138 4.95811 5.26933 5.31387 5.49445 5.53292 5.59905 5.79111 5.88119 5.89930 5.95288 6.09422 6.11147 6.12512 6.44595 6.65574 7.06129 7.57428 7.63737 7.88130 8.22183 8.32576 8.91384 9.50308 11.02060 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.077436 B = 0.005201 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.500573 B = 5381.930240 C = 5594.396453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.106 4.106 4 C -0.144 4.144 5 C -0.163 4.163 6 H 0.132 0.868 7 C 0.484 3.516 8 O -0.514 6.514 9 O -0.355 6.355 10 C 0.076 3.924 11 C 0.024 3.976 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.286 1.286 18 H -0.275 1.275 19 H -0.275 1.275 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.561 6.275 -9.885 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.163 4.163 4 C -0.181 4.181 5 C -0.182 4.182 6 H 0.150 0.850 7 C 0.327 3.673 8 O -0.404 6.404 9 O -0.271 6.271 10 C 0.003 3.997 11 C -0.013 4.013 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.211 1.211 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.338 6.412 -9.785 17.002 hybrid contribution 1.037 0.126 0.626 1.218 sum -11.300 6.537 -9.159 15.948 Atomic orbital electron populations 1.21395 0.91271 1.02250 1.02345 1.21703 0.94873 0.91887 1.01285 1.21400 0.99707 0.92442 1.02754 1.23282 1.03037 1.01127 0.90697 1.21919 0.95625 1.05092 0.95525 0.85021 1.22474 0.84913 0.83271 0.76618 1.90620 1.68068 1.22395 1.59308 1.86515 1.38014 1.41416 1.61118 1.23626 0.79879 1.01108 0.95072 1.19163 0.95203 0.91645 0.95255 1.20946 1.06223 0.96687 1.32681 0.92328 1.24982 0.98136 0.94814 0.96188 1.69969 1.39040 1.02833 1.41022 0.86524 0.83087 0.78030 0.79611 1.21105 1.20067 1.20068 0.91831 0.91593 0.92129 0.91630 0.93117 0.91307 0.88100 0.87458 0.92371 0.92400 0.95375 0.95370 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.85 37.15 0.37 -0.62 16 2 C -0.10 -1.10 2.70 -154.47 -0.42 -1.52 16 3 C -0.11 -1.31 8.09 37.16 0.30 -1.01 16 4 C -0.14 -1.59 9.53 -26.69 -0.25 -1.85 16 5 C -0.16 -2.19 6.02 -91.77 -0.55 -2.75 16 6 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 7 C 0.48 8.79 7.72 36.00 0.28 9.07 16 8 O -0.51 -10.15 12.86 -18.76 -0.24 -10.39 16 9 O -0.35 -7.43 10.22 -39.26 -0.40 -7.83 16 10 C 0.08 1.74 5.40 37.16 0.20 1.94 16 11 C 0.02 0.65 5.35 -27.89 -0.15 0.51 16 12 C -0.53 -15.05 9.11 -34.44 -0.31 -15.37 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 16 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.07 0.49 7.92 -51.93 -0.41 0.07 16 22 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 23 H 0.06 0.91 7.02 -51.93 -0.36 0.54 16 24 H 0.05 0.51 7.92 -51.93 -0.41 0.09 16 25 H 0.07 0.97 7.26 -51.93 -0.38 0.59 16 26 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 27 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 28 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 29 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 275.49 15.07 4.15 4.15 Total: -1.00 -30.89 275.49 -6.30 -37.19 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.89 Total: -3.84 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.64 Total: -9.94 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.90 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.64 Total: -18.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.89 -6.30 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379363770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.743 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds