Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 115.55369 * 2 1 4 4 C 1.53075 * 117.49414 * 214.26591 * 2 1 3 5 5 C 1.53000 * 59.98657 * 252.51722 * 4 2 1 6 6 H 1.08991 * 117.49635 * 107.50052 * 5 4 2 7 7 C 1.50696 * 117.49919 * 252.49886 * 5 4 2 8 8 O 1.20835 * 120.00048 * 68.74431 * 7 5 4 9 9 O 1.34231 * 120.00076 * 248.74920 * 7 5 4 10 10 C 1.45196 * 117.00039 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47460 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47339 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 300.00306 * 16 14 12 19 19 H 1.48504 * 109.46636 * 59.99865 * 16 14 12 20 20 H 1.08999 * 109.47477 * 274.33480 * 1 2 3 21 21 H 1.09005 * 109.47074 * 34.33040 * 1 2 3 22 22 H 1.08994 * 109.47272 * 154.33049 * 1 2 3 23 23 H 1.08994 * 109.46896 * 205.67031 * 3 2 1 24 24 H 1.08996 * 109.46545 * 325.66868 * 3 2 1 25 25 H 1.08994 * 109.47004 * 85.66752 * 3 2 1 26 26 H 1.09007 * 117.51207 * 145.03650 * 4 2 1 27 27 H 1.09001 * 117.49127 * 0.02562 * 4 2 1 28 28 H 1.09003 * 109.47610 * 59.99596 * 10 9 7 29 29 H 1.08999 * 109.47595 * 299.99773 * 10 9 7 30 30 H 1.09005 * 109.46800 * 60.00463 * 11 10 9 31 31 H 1.08998 * 109.47382 * 300.00262 * 11 10 9 32 32 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2366 -1.1222 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 1.6111 -1.8578 1.2693 7 6 3.5291 -0.7807 1.4612 8 8 3.9693 0.3431 1.4027 9 8 4.1918 -1.7262 2.1458 10 6 5.4303 -1.3274 2.7903 11 6 6.0373 -2.5293 3.5166 12 6 7.3230 -2.1156 4.1850 13 1 7.6726 -1.0973 4.0998 14 6 8.0538 -3.0373 4.9044 15 7 7.6284 -4.2775 5.0076 16 14 9.6479 -2.5247 5.7322 17 1 10.2369 -3.6913 6.4373 18 1 10.6021 -2.0320 4.7066 19 1 9.3715 -1.4429 6.7114 20 1 -0.3634 0.0777 1.0247 21 1 -0.3633 0.8487 -0.5796 22 1 -0.3633 -0.9262 -0.4451 23 1 3.1823 1.3086 -0.4452 24 1 1.5810 2.0741 -0.5796 25 1 2.2766 1.7416 1.0247 26 1 3.1719 -0.8771 -1.2679 27 1 1.6112 -1.8597 -1.2675 28 1 5.2267 -0.5337 3.5091 29 1 6.1311 -0.9652 2.0381 30 1 6.2410 -3.3232 2.7980 31 1 5.3364 -2.8912 4.2689 32 1 8.1427 -4.9260 5.5134 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379363770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = -99.385915 kcal Electronic energy + Delta-G solvation = -13773.060770 eV Core-core repulsion = 11312.312302 eV Total energy + Delta-G solvation = -2460.748468 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.73104 -39.17361 -37.26757 -35.47017 -32.42511 -30.52794 -28.36732 -27.39776 -25.44734 -22.97483 -21.81161 -20.04261 -19.03404 -18.20199 -17.53382 -17.11103 -16.51221 -15.62400 -15.02560 -14.93685 -14.55254 -14.36035 -14.07541 -13.52847 -13.18863 -13.09363 -12.90599 -12.72448 -12.58810 -12.56818 -12.20157 -11.79411 -11.52262 -11.49741 -11.26107 -11.20526 -10.67562 -10.62859 -8.28725 -6.42708 1.07846 1.39706 1.43837 1.51604 1.71597 2.38892 2.66829 3.05406 3.54325 3.66613 3.76150 4.05986 4.14327 4.18212 4.23690 4.62331 4.66693 4.79742 4.81174 4.95196 5.02846 5.06379 5.08579 5.23296 5.30868 5.42599 5.45812 5.59118 5.73083 6.03858 6.69438 6.77438 7.27240 8.83822 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.077436 B = 0.005201 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.500573 B = 5381.930240 C = 5594.396453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.107 4.107 4 C -0.129 4.129 5 C -0.184 4.184 6 H 0.149 0.851 7 C 0.477 3.523 8 O -0.534 6.534 9 O -0.367 6.367 10 C 0.091 3.909 11 C 0.031 3.969 12 C -0.553 4.553 13 H 0.064 0.936 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.975 3.025 17 H -0.278 1.278 18 H -0.265 1.265 19 H -0.266 1.266 20 H 0.063 0.937 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.141 0.859 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 6.852 -10.639 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.164 4.164 4 C -0.166 4.166 5 C -0.203 4.203 6 H 0.167 0.833 7 C 0.322 3.678 8 O -0.425 6.425 9 O -0.283 6.283 10 C 0.018 3.982 11 C -0.006 4.006 12 C -0.591 4.591 13 H 0.083 0.917 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.798 3.202 17 H -0.203 1.203 18 H -0.190 1.190 19 H -0.190 1.190 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.159 0.841 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.079 7.001 -10.556 18.207 hybrid contribution 1.199 -0.033 0.804 1.444 sum -11.880 6.968 -9.752 16.876 Atomic orbital electron populations 1.21437 0.88554 1.03979 1.02928 1.21899 0.96640 0.90684 0.99672 1.21371 0.99393 0.94024 1.01592 1.23470 1.03106 1.01449 0.88565 1.22096 0.93569 1.07623 0.96980 0.83308 1.23485 0.85868 0.82558 0.75855 1.90610 1.68902 1.23054 1.59915 1.86511 1.37330 1.42675 1.61832 1.23133 0.81047 0.99051 0.94954 1.18978 0.94843 0.92427 0.94381 1.21341 1.07133 0.97241 1.33392 0.91732 1.25983 1.02006 0.94645 0.96590 1.70094 1.40722 1.04063 1.41683 0.85350 0.78174 0.77984 0.78644 1.20311 1.19019 1.19044 0.91805 0.90081 0.90261 0.93699 0.90413 0.93514 0.89025 0.84099 0.92384 0.92363 0.97596 0.97604 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.85 71.98 0.71 -0.80 16 2 C -0.09 -1.81 2.70 -52.15 -0.14 -1.95 16 3 C -0.11 -2.53 8.09 71.98 0.58 -1.95 16 4 C -0.13 -2.53 9.53 30.62 0.29 -2.24 16 5 C -0.18 -4.71 6.02 -11.54 -0.07 -4.78 16 6 H 0.15 3.27 8.14 -2.39 -0.02 3.25 16 7 C 0.48 17.46 7.72 71.23 0.55 18.01 16 8 O -0.53 -21.46 12.86 21.94 0.28 -21.18 16 9 O -0.37 -15.69 10.22 -51.43 -0.53 -16.22 16 10 C 0.09 4.31 5.40 71.98 0.39 4.70 16 11 C 0.03 1.72 5.35 29.85 0.16 1.88 16 12 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 13 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 14 C 0.01 0.40 5.46 84.66 0.46 0.86 16 15 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 16 Si 0.98 44.04 29.54 68.60 2.03 46.07 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.08 0.88 7.92 -2.38 -0.02 0.86 16 22 H 0.08 0.80 7.90 -2.39 -0.02 0.78 16 23 H 0.04 1.23 7.02 -2.39 -0.02 1.21 16 24 H 0.08 1.39 7.92 -2.39 -0.02 1.37 16 25 H 0.05 1.31 7.26 -2.39 -0.02 1.29 16 26 H 0.09 1.99 8.05 -2.38 -0.02 1.97 16 27 H 0.14 1.83 8.05 -2.39 -0.02 1.82 16 28 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 29 H 0.06 2.71 8.13 -2.39 -0.02 2.69 16 30 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -67.37 275.49 6.32 -61.06 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.08 Total: 4.30 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 3.17 Total: -18.12 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.28 Total: -55.91 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.24 Total: -37.40 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.37 6.32 -61.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379363770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.330 kcal (2) G-P(sol) polarization free energy of solvation -67.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds