Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 O 1.45203 * 109.47234 * 65.00037 * 3 2 1 14 14 C 1.34232 * 117.00058 * 270.00198 * 13 3 2 15 15 O 1.20823 * 120.00091 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99871 * 179.97438 * 14 13 3 17 17 C 1.52993 * 115.55058 * 34.41747 * 16 14 13 18 18 C 1.53001 * 117.49486 * 248.74627 * 16 14 13 19 19 C 1.52995 * 117.49689 * 180.08714 * 16 14 13 20 20 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.47518 * 85.58048 * 17 16 14 27 27 H 1.09001 * 109.47215 * 205.58403 * 17 16 14 28 28 H 1.09002 * 109.47431 * 325.58582 * 17 16 14 29 29 H 1.08998 * 117.50535 * 0.02562 * 18 16 14 30 30 H 1.09005 * 117.49230 * 145.02239 * 18 16 14 31 31 H 1.09001 * 117.50045 * 214.97578 * 19 16 14 32 32 H 1.09002 * 117.50366 * 359.97438 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7254 1.2560 15 8 -0.2189 2.7377 0.2654 16 6 0.0069 3.4216 2.5088 17 6 1.1076 4.0663 3.3535 18 6 -1.1899 2.8198 3.2480 19 6 -1.3515 4.1241 2.4632 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.8292 -0.0602 -2.9503 26 1 1.3152 5.0678 2.9768 27 1 0.7796 4.1292 4.3911 28 1 2.0124 3.4613 3.2945 29 1 -1.6402 1.9202 2.8285 30 1 -1.1932 2.8836 4.3362 31 1 -1.4611 5.0454 3.0353 32 1 -1.9081 4.0831 1.5270 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379378966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = -95.559264 kcal Electronic energy + Delta-G solvation = -14624.173627 eV Core-core repulsion = 12163.591095 eV Total energy + Delta-G solvation = -2460.582532 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.58515 -38.66048 -37.11422 -35.51645 -33.38257 -29.80778 -29.20240 -25.82849 -24.57339 -23.42835 -22.00163 -20.51600 -18.74400 -18.31248 -17.39809 -17.02317 -16.48446 -15.44172 -15.13249 -14.79054 -14.20009 -13.92965 -13.68916 -13.38204 -13.30367 -13.11479 -13.08754 -12.83874 -12.55328 -12.40060 -12.13879 -11.79995 -11.61324 -11.42292 -11.13888 -10.94986 -10.82860 -10.54826 -8.29454 -6.46542 1.26718 1.40278 1.41010 1.54906 2.00471 2.40336 2.80370 2.99900 3.59982 3.87579 3.91571 4.03497 4.32631 4.35254 4.51013 4.67411 4.76498 4.80572 4.89620 4.92247 4.96192 5.04939 5.17684 5.20003 5.32331 5.37941 5.49939 5.64200 5.95917 6.12056 6.58984 7.01255 7.25927 8.77757 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.042667 B = 0.008897 C = 0.007888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.092777 B = 3146.313791 C = 3548.724489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.223 3.777 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.065 0.935 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.276 1.276 13 O -0.359 6.359 14 C 0.476 3.524 15 O -0.550 6.550 16 C -0.169 4.169 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.134 4.134 20 H 0.033 0.967 21 H 0.063 0.937 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.271 0.729 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 4.496 10.936 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.021 0.979 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.188 1.188 11 H -0.195 1.195 12 H -0.201 1.201 13 O -0.275 6.275 14 C 0.322 3.678 15 O -0.442 6.442 16 C -0.170 4.170 17 C -0.163 4.163 18 C -0.168 4.168 19 C -0.171 4.171 20 H 0.053 0.947 21 H 0.082 0.918 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.820 4.375 10.449 12.736 hybrid contribution 0.794 -0.247 -0.937 1.252 sum -5.026 4.128 9.512 11.523 Atomic orbital electron populations 1.21704 0.96328 1.00622 0.99949 1.21857 0.94454 0.98054 1.02336 1.20388 0.94650 0.89328 0.78653 0.97929 1.21355 0.90447 1.39938 1.06937 0.91680 1.25835 1.04403 0.93831 0.94302 1.70021 1.37432 1.37988 1.09858 0.85144 0.77516 0.78405 0.78398 1.18766 1.19528 1.20096 1.86441 1.35963 1.62796 1.42267 1.23295 0.79346 0.75565 0.89615 1.90562 1.56302 1.60053 1.37261 1.21241 0.93728 1.06800 0.95230 1.21306 0.95742 0.99894 0.99318 1.23327 0.95072 0.97399 1.00962 1.23242 0.93231 0.97978 1.02599 0.94732 0.91789 0.94578 0.93558 0.89499 0.91999 0.91508 0.88161 0.92765 0.89531 0.83746 0.84089 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.57 71.98 0.62 -5.23 16 2 C -0.13 -6.71 5.49 30.59 0.17 -6.54 16 3 C 0.22 12.60 2.25 29.85 0.07 12.66 16 4 H 0.00 0.19 7.16 -2.39 -0.02 0.17 16 5 C -0.55 -31.97 8.90 25.60 0.23 -31.74 16 6 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -53.24 11.29 21.45 0.24 -53.00 16 9 Si 0.98 43.49 29.54 68.60 2.03 45.51 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 13 O -0.36 -18.03 9.08 -51.43 -0.47 -18.49 16 14 C 0.48 21.02 5.95 71.24 0.42 21.45 16 15 O -0.55 -27.22 13.40 21.97 0.29 -26.92 16 16 C -0.17 -5.18 2.64 -52.93 -0.14 -5.32 16 17 C -0.11 -2.68 9.81 71.98 0.71 -1.97 16 18 C -0.13 -3.00 9.88 30.62 0.30 -2.70 16 19 C -0.13 -3.18 9.77 30.62 0.30 -2.88 16 20 H 0.03 1.66 7.80 -2.39 -0.02 1.64 16 21 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 22 H 0.04 1.57 6.06 -2.39 -0.01 1.55 16 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.09 4.90 5.95 -2.39 -0.01 4.89 16 25 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 1.74 7.90 -2.39 -0.02 1.72 16 28 H 0.05 1.64 7.50 -2.39 -0.02 1.62 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.14 2.19 8.05 -2.38 -0.02 2.17 16 31 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 2.46 7.67 -2.39 -0.02 2.44 16 Total: -1.00 -68.09 268.09 6.31 -61.78 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.09 Total: 12.05 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.12 Total: -20.93 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.17 Total: -45.42 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.09 6.31 -61.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.780 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds