Wall clock time and date at job start Mon Mar 30 2020 02:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 13 13 C 1.34224 * 117.00063 * 269.99753 * 12 2 1 14 14 O 1.20827 * 119.99784 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00259 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.47249 * 180.02562 * 15 13 12 17 17 H 1.09002 * 115.55142 * 330.66903 * 16 15 13 18 18 C 1.53000 * 117.49812 * 116.37858 * 16 15 13 19 19 C 1.52998 * 60.00136 * 107.48565 * 18 16 15 20 20 H 1.08996 * 117.52208 * 252.51669 * 19 18 16 21 21 C 1.53006 * 117.49581 * 107.48361 * 19 18 16 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46984 * 300.00023 * 15 13 12 27 27 H 1.08999 * 109.47120 * 59.99618 * 15 13 12 28 28 H 1.09002 * 117.49779 * 214.97925 * 18 16 15 29 29 H 1.08998 * 117.50198 * 359.97438 * 18 16 15 30 30 H 1.08997 * 109.47101 * 351.38351 * 21 19 18 31 31 H 1.09004 * 109.46608 * 111.38348 * 21 19 18 32 32 H 1.08993 * 109.47117 * 231.37705 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9974 1.2517 2.2505 15 6 2.7183 -0.5772 3.5495 16 6 2.8624 0.4889 4.6374 17 1 3.0872 1.4949 4.2830 18 6 1.9751 0.3578 5.8770 19 6 3.4723 0.0575 5.9727 20 1 3.7712 -0.9855 6.0760 21 6 4.3505 1.0716 6.7086 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 2.0087 -1.3369 3.8775 27 1 3.6871 -1.0410 3.3640 28 1 1.6158 1.2777 6.3382 29 1 1.2884 -0.4876 5.9172 30 1 3.7653 1.9632 6.9338 31 1 4.7138 0.6313 7.6371 32 1 5.1980 1.3427 6.0790 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379389835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:18 Heat of formation + Delta-G solvation = -83.666235 kcal Electronic energy + Delta-G solvation = -13910.734642 eV Core-core repulsion = 11450.667831 eV Total energy + Delta-G solvation = -2460.066811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.58958 -37.78692 -35.56595 -33.23607 -30.68861 -29.39051 -27.52495 -25.30187 -22.44262 -21.02794 -20.22440 -19.38639 -16.89718 -16.53929 -15.60803 -15.23807 -14.91096 -14.30848 -13.91417 -13.21856 -12.83367 -12.74625 -12.36917 -12.00473 -11.72027 -11.42240 -11.23662 -11.16710 -11.05616 -10.81574 -10.34431 -10.27195 -9.98750 -9.80596 -9.53939 -9.45316 -8.87154 -8.48079 -6.17102 -4.23881 3.07390 3.24380 3.30864 3.35822 3.58543 3.88659 4.34578 4.70307 4.85562 4.94369 5.15972 5.23828 5.35342 5.56655 5.70411 5.76814 5.79322 5.81009 5.94783 6.03196 6.20992 6.41219 6.67250 6.91029 6.94479 7.21721 7.62388 7.75475 7.97378 8.16862 8.68255 8.92517 9.41737 10.90447 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.066048 B = 0.005857 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.831352 B = 4779.427200 C = 4932.806491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.359 6.359 13 C 0.453 3.547 14 O -0.522 6.522 15 C -0.086 4.086 16 C -0.138 4.138 17 H 0.119 0.881 18 C -0.174 4.174 19 C -0.155 4.155 20 H 0.104 0.896 21 C -0.122 4.122 22 H 0.099 0.901 23 H 0.016 0.984 24 H 0.036 0.964 25 H 0.265 0.735 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -2.429 13.535 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.275 6.275 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.124 4.124 16 C -0.156 4.156 17 H 0.137 0.863 18 C -0.211 4.211 19 C -0.173 4.173 20 H 0.122 0.878 21 C -0.179 4.179 22 H 0.117 0.883 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.390 -1.966 13.323 13.888 hybrid contribution 0.108 -0.286 -0.909 0.959 sum 3.498 -2.252 12.414 13.093 Atomic orbital electron populations 1.22153 0.97620 1.00049 1.01377 1.20624 0.91378 0.93925 0.77925 0.93607 1.21082 1.32357 1.13420 0.88944 0.91278 1.24896 0.94954 0.95103 0.99087 1.69916 1.36202 1.22605 1.24029 0.86221 0.78628 0.79490 0.81807 1.19476 1.20720 1.20752 1.86478 1.75848 1.43750 1.21453 1.23271 0.74940 0.86053 0.86161 1.90577 1.48795 1.17109 1.84742 1.20872 1.03397 0.97977 0.90135 1.22230 1.04621 1.00711 0.88083 0.86307 1.23211 0.92888 1.03113 1.01916 1.22422 0.95067 1.00234 0.99595 0.87802 1.21354 0.99190 0.97857 0.99507 0.88284 0.96539 0.94476 0.92480 0.88363 0.87923 0.88806 0.88829 0.92549 0.92337 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.85 8.90 -34.44 -0.31 -15.16 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 O -0.36 -8.74 9.86 -39.24 -0.39 -9.13 16 13 C 0.45 9.61 7.93 36.01 0.29 9.89 16 14 O -0.52 -12.55 14.78 -18.75 -0.28 -12.83 16 15 C -0.09 -1.29 6.09 -27.88 -0.17 -1.46 16 16 C -0.14 -1.90 5.13 -90.62 -0.47 -2.36 16 17 H 0.12 1.87 7.31 -51.93 -0.38 1.49 16 18 C -0.17 -2.01 9.82 -26.73 -0.26 -2.27 16 19 C -0.16 -1.65 6.13 -90.62 -0.56 -2.21 16 20 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 21 C -0.12 -1.14 10.19 37.16 0.38 -0.76 16 22 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.10 1.28 7.87 -51.93 -0.41 0.87 16 27 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 29 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 30 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 275.56 15.07 4.15 4.15 Total: -1.00 -30.83 275.56 -6.62 -37.45 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.80 Total: -0.35 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.91 Total: -10.55 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.63 Total: -24.98 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.66 Total: -21.95 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.83 -6.62 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379389835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.217 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds