Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47472 * 2 1 4 4 C 1.50700 * 109.46869 * 240.00265 * 2 1 3 5 5 H 1.08004 * 120.00339 * 239.99610 * 4 2 1 6 6 C 1.37880 * 120.00072 * 60.00468 * 4 2 1 7 7 N 1.31516 * 119.99552 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47433 * 89.99491 * 8 6 4 10 10 H 1.48501 * 109.46998 * 209.99877 * 8 6 4 11 11 H 1.48497 * 109.47110 * 329.99105 * 8 6 4 12 12 O 1.45207 * 109.47335 * 120.00694 * 2 1 3 13 13 C 1.34227 * 116.99737 * 269.99344 * 12 2 1 14 14 O 1.20828 * 120.00108 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00078 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47228 * 180.02562 * 15 13 12 17 17 H 1.08995 * 115.55013 * 29.32559 * 16 15 13 18 18 C 1.53073 * 117.49010 * 243.60328 * 16 15 13 19 19 C 1.52998 * 117.49558 * 175.00272 * 16 15 13 20 20 H 1.08994 * 117.50444 * 359.97349 * 19 16 15 21 21 C 1.53006 * 117.49745 * 214.97483 * 19 16 15 22 22 H 1.08996 * 109.47183 * 59.99398 * 1 2 3 23 23 H 1.08993 * 109.47062 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46361 * 299.99057 * 1 2 3 25 25 H 0.97004 * 120.00132 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46990 * 60.00150 * 15 13 12 27 27 H 1.09000 * 109.46734 * 300.00491 * 15 13 12 28 28 H 1.08998 * 117.51502 * 145.03737 * 18 16 15 29 29 H 1.09002 * 117.49965 * 359.97438 * 18 16 15 30 30 H 1.09001 * 109.47002 * 60.08591 * 21 19 16 31 31 H 1.08993 * 109.46955 * 180.09028 * 21 19 16 32 32 H 1.09000 * 109.47050 * 300.08857 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4864 -0.1410 -5.1123 11 1 3.6291 -1.7580 -3.7125 12 8 2.0140 -0.6846 1.1855 13 6 2.2173 0.0638 2.2811 14 8 1.9976 1.2515 2.2506 15 6 2.7185 -0.5775 3.5494 16 6 2.8627 0.4885 4.6374 17 1 2.1791 1.3339 4.5608 18 6 4.2690 0.7623 5.1763 19 6 3.2497 0.0176 6.0407 20 1 3.4010 -1.0515 6.1891 21 6 2.6477 0.7700 7.2293 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5137 0.8901 25 1 0.7081 1.1612 -3.4843 26 1 3.6873 -1.0412 3.3638 27 1 2.0089 -1.3372 3.8773 28 1 4.5109 1.7881 5.4543 29 1 5.0908 0.1826 4.7558 30 1 1.5607 0.6979 7.1921 31 1 3.0095 0.3301 8.1586 32 1 2.9442 1.8179 7.1838 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379389836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = -83.622098 kcal Electronic energy + Delta-G solvation = -13909.982920 eV Core-core repulsion = 11449.918022 eV Total energy + Delta-G solvation = -2460.064898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.58741 -37.78082 -35.56489 -33.23467 -30.68888 -29.38962 -27.52582 -25.29873 -22.43268 -21.03750 -20.22763 -19.37339 -16.89455 -16.52850 -15.64332 -15.23368 -14.85794 -14.33514 -13.90851 -13.21718 -12.95804 -12.66842 -12.27056 -12.03555 -11.75734 -11.40847 -11.24221 -11.15831 -11.04916 -10.81223 -10.37046 -10.26653 -9.97989 -9.81177 -9.51626 -9.46340 -8.88189 -8.47548 -6.16835 -4.23700 3.07361 3.25623 3.30766 3.34640 3.58617 3.88730 4.34783 4.70558 4.85821 4.94538 5.16101 5.23664 5.35425 5.57245 5.70007 5.76778 5.79268 5.82200 5.94431 6.03022 6.21321 6.41190 6.67261 6.91040 6.94426 7.21803 7.62266 7.75630 7.97459 8.17005 8.68220 8.92367 9.41796 10.90647 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.068244 B = 0.005857 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.191112 B = 4779.341936 C = 4940.181488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 O -0.359 6.359 13 C 0.453 3.547 14 O -0.522 6.522 15 C -0.086 4.086 16 C -0.138 4.138 17 H 0.119 0.881 18 C -0.174 4.174 19 C -0.155 4.155 20 H 0.104 0.896 21 C -0.122 4.122 22 H 0.099 0.901 23 H 0.036 0.964 24 H 0.015 0.985 25 H 0.266 0.734 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -2.442 13.564 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.275 6.275 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.124 4.124 16 C -0.157 4.157 17 H 0.137 0.863 18 C -0.211 4.211 19 C -0.174 4.174 20 H 0.122 0.878 21 C -0.179 4.179 22 H 0.117 0.883 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.260 -1.973 13.349 13.882 hybrid contribution 0.214 -0.283 -0.937 1.002 sum 3.473 -2.257 12.412 13.085 Atomic orbital electron populations 1.22154 0.97617 1.00057 1.01370 1.20618 0.91370 0.93924 0.77915 0.93602 1.21042 1.32449 1.13425 0.88963 0.91344 1.24895 0.94962 0.95085 0.99074 1.69905 1.36130 1.22578 1.24138 0.86269 0.79289 0.79126 0.81419 1.20357 1.20972 1.19636 1.86479 1.75846 1.43735 1.21472 1.23272 0.74879 0.86051 0.86221 1.90577 1.48835 1.17070 1.84741 1.20872 1.03458 0.98083 0.89971 1.22235 0.99590 1.00987 0.92841 0.86335 1.23226 0.92782 1.01321 1.03757 1.22424 1.03596 0.99632 0.91701 0.87815 1.21353 1.00673 0.99628 0.96240 0.88278 0.94469 0.96550 0.92424 0.88272 0.88018 0.88789 0.88778 0.92162 0.92336 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.33 37.16 0.35 -3.65 16 2 C 0.21 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.88 8.90 -34.44 -0.31 -15.19 16 5 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 O -0.36 -8.74 9.86 -39.25 -0.39 -9.13 16 13 C 0.45 9.61 7.93 36.01 0.29 9.90 16 14 O -0.52 -12.55 14.78 -18.75 -0.28 -12.83 16 15 C -0.09 -1.29 6.09 -27.88 -0.17 -1.46 16 16 C -0.14 -1.90 5.14 -90.58 -0.47 -2.36 16 17 H 0.12 1.86 7.31 -51.93 -0.38 1.48 16 18 C -0.17 -2.03 9.83 -26.69 -0.26 -2.29 16 19 C -0.16 -1.66 6.12 -90.62 -0.56 -2.21 16 20 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.12 -1.13 10.19 37.16 0.38 -0.75 16 22 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.10 1.31 7.88 -51.93 -0.41 0.90 16 27 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 29 H 0.09 1.02 8.03 -51.93 -0.42 0.61 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 LS Contribution 275.57 15.07 4.15 4.15 Total: -1.00 -30.82 275.57 -6.62 -37.44 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.80 Total: -0.32 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.91 Total: -10.57 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.63 Total: -24.98 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.66 Total: -21.96 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.82 -6.62 -37.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379389836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.185 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds