Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47472 * 2 1 4 4 C 1.50700 * 109.46869 * 240.00265 * 2 1 3 5 5 H 1.08004 * 120.00339 * 239.99610 * 4 2 1 6 6 C 1.37880 * 120.00072 * 60.00468 * 4 2 1 7 7 N 1.31516 * 119.99552 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47433 * 89.99491 * 8 6 4 10 10 H 1.48501 * 109.46998 * 209.99877 * 8 6 4 11 11 H 1.48497 * 109.47110 * 329.99105 * 8 6 4 12 12 O 1.45207 * 109.47335 * 120.00694 * 2 1 3 13 13 C 1.34227 * 116.99737 * 269.99344 * 12 2 1 14 14 O 1.20828 * 120.00108 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00078 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47228 * 180.02562 * 15 13 12 17 17 H 1.08995 * 115.55013 * 29.32559 * 16 15 13 18 18 C 1.53073 * 117.49010 * 243.60328 * 16 15 13 19 19 C 1.52998 * 117.49558 * 175.00272 * 16 15 13 20 20 H 1.08994 * 117.50444 * 359.97349 * 19 16 15 21 21 C 1.53006 * 117.49745 * 214.97483 * 19 16 15 22 22 H 1.08996 * 109.47183 * 59.99398 * 1 2 3 23 23 H 1.08993 * 109.47062 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46361 * 299.99057 * 1 2 3 25 25 H 0.97004 * 120.00132 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46990 * 60.00150 * 15 13 12 27 27 H 1.09000 * 109.46734 * 300.00491 * 15 13 12 28 28 H 1.08998 * 117.51502 * 145.03737 * 18 16 15 29 29 H 1.09002 * 117.49965 * 359.97438 * 18 16 15 30 30 H 1.09001 * 109.47002 * 60.08591 * 21 19 16 31 31 H 1.08993 * 109.46955 * 180.09028 * 21 19 16 32 32 H 1.09000 * 109.47050 * 300.08857 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4864 -0.1410 -5.1123 11 1 3.6291 -1.7580 -3.7125 12 8 2.0140 -0.6846 1.1855 13 6 2.2173 0.0638 2.2811 14 8 1.9976 1.2515 2.2506 15 6 2.7185 -0.5775 3.5494 16 6 2.8627 0.4885 4.6374 17 1 2.1791 1.3339 4.5608 18 6 4.2690 0.7623 5.1763 19 6 3.2497 0.0176 6.0407 20 1 3.4010 -1.0515 6.1891 21 6 2.6477 0.7700 7.2293 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5137 0.8901 25 1 0.7081 1.1612 -3.4843 26 1 3.6873 -1.0412 3.3638 27 1 2.0089 -1.3372 3.8773 28 1 4.5109 1.7881 5.4543 29 1 5.0908 0.1826 4.7558 30 1 1.5607 0.6979 7.1921 31 1 3.0095 0.3301 8.1586 32 1 2.9442 1.8179 7.1838 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379389836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = -100.858478 kcal Electronic energy + Delta-G solvation = -13910.730346 eV Core-core repulsion = 11449.918022 eV Total energy + Delta-G solvation = -2460.812323 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.32525 -38.89814 -37.42055 -35.33487 -32.18722 -31.12339 -28.51602 -27.46759 -24.12242 -22.37200 -21.40517 -20.89222 -18.84437 -18.40393 -17.31025 -17.03743 -16.42984 -15.68173 -15.19855 -14.75989 -14.33995 -13.94840 -13.84818 -13.58914 -13.15372 -12.99577 -12.99085 -12.80278 -12.41784 -12.35188 -12.19809 -12.16043 -11.59029 -11.37229 -11.01533 -10.88568 -10.64501 -10.60482 -8.29584 -6.47000 1.37292 1.41907 1.44273 1.55441 2.02654 2.41472 2.86566 3.01007 3.68639 3.81974 3.94081 4.10524 4.43103 4.48144 4.54244 4.61026 4.68245 4.76629 4.83734 4.91818 4.97789 4.99058 5.16974 5.22056 5.29777 5.47353 5.49463 5.62141 5.91947 6.10414 6.59054 6.99143 7.25673 8.78301 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.068244 B = 0.005857 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.191112 B = 4779.341936 C = 4940.181488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.265 1.265 12 O -0.366 6.366 13 C 0.444 3.556 14 O -0.557 6.557 15 C -0.071 4.071 16 C -0.168 4.168 17 H 0.090 0.910 18 C -0.175 4.175 19 C -0.128 4.128 20 H 0.125 0.875 21 C -0.125 4.125 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.022 0.978 25 H 0.271 0.729 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -4.124 14.312 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.282 6.282 13 C 0.289 3.711 14 O -0.449 6.449 15 C -0.108 4.108 16 C -0.186 4.186 17 H 0.109 0.891 18 C -0.212 4.212 19 C -0.146 4.146 20 H 0.143 0.857 21 C -0.182 4.182 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.131 -3.658 14.129 15.168 hybrid contribution -0.058 0.313 -1.088 1.134 sum 4.073 -3.344 13.041 14.065 Atomic orbital electron populations 1.21976 0.96785 1.00423 1.00743 1.20332 0.92050 0.92005 0.79435 0.97751 1.21319 1.33493 1.13928 0.89979 0.91354 1.25874 0.94683 0.95640 1.02253 1.70027 1.36627 1.23716 1.25250 0.85145 0.79044 0.78079 0.76912 1.19096 1.20286 1.18875 1.86476 1.76250 1.43870 1.21649 1.24625 0.73688 0.85865 0.86876 1.90560 1.50281 1.18825 1.85206 1.21015 1.04823 0.98524 0.86462 1.22123 1.00902 1.00667 0.94914 0.89129 1.23352 0.92183 1.01985 1.03700 1.22565 1.01221 1.00814 0.90001 0.85677 1.21420 1.00682 0.99529 0.96601 0.90112 0.93425 0.95893 0.91979 0.85900 0.85402 0.88739 0.87651 0.92208 0.90232 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 2 C 0.22 12.18 2.56 29.85 0.08 12.26 16 3 H 0.00 0.30 7.16 -2.39 -0.02 0.28 16 4 C -0.55 -31.80 8.90 25.60 0.23 -31.57 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.32 16 8 Si 0.99 43.17 29.54 68.60 2.03 45.20 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 12 O -0.37 -18.04 9.86 -51.39 -0.51 -18.54 16 13 C 0.44 19.04 7.93 71.24 0.56 19.61 16 14 O -0.56 -27.78 14.78 21.96 0.32 -27.46 16 15 C -0.07 -2.01 6.09 29.85 0.18 -1.83 16 16 C -0.17 -4.41 5.14 -10.77 -0.06 -4.47 16 17 H 0.09 2.91 7.31 -2.39 -0.02 2.89 16 18 C -0.18 -3.76 9.83 30.62 0.30 -3.46 16 19 C -0.13 -2.37 6.12 -10.79 -0.07 -2.43 16 20 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 21 C -0.13 -2.02 10.19 71.98 0.73 -1.29 16 22 H 0.08 4.57 6.07 -2.39 -0.01 4.56 16 23 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.12 2.92 7.88 -2.39 -0.02 2.90 16 27 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 29 H 0.11 2.02 8.03 -2.39 -0.02 2.00 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.89 7.90 -2.39 -0.02 0.87 16 Total: -1.00 -67.78 275.57 6.26 -61.52 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.09 Total: 11.32 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 3.08 Total: -18.71 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.24 Total: -53.32 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.18 Total: -46.00 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -67.78 6.26 -61.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379389836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.338 kcal (2) G-P(sol) polarization free energy of solvation -67.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds