Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 O 1.45200 * 109.46596 * 119.99568 * 2 1 3 13 13 C 1.34232 * 117.00036 * 269.99777 * 12 2 1 14 14 O 1.20826 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99952 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47063 * 180.02562 * 15 13 12 17 17 H 1.09002 * 115.54605 * 330.66524 * 16 15 13 18 18 C 1.52997 * 117.50026 * 116.37380 * 16 15 13 19 19 C 1.53002 * 117.49759 * 184.99978 * 16 15 13 20 20 H 1.09000 * 117.49595 * 145.01905 * 19 16 15 21 21 C 1.52999 * 117.49859 * 359.97438 * 19 16 15 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.46769 * 300.00028 * 15 13 12 27 27 H 1.08999 * 109.46972 * 59.99803 * 15 13 12 28 28 H 1.08995 * 117.49970 * 214.97729 * 18 16 15 29 29 H 1.08999 * 117.49728 * 0.02562 * 18 16 15 30 30 H 1.08997 * 109.46837 * 59.99967 * 21 19 16 31 31 H 1.09000 * 109.46804 * 179.97438 * 21 19 16 32 32 H 1.09004 * 109.47065 * 299.99967 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 8 2.0139 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9973 1.2519 2.2506 15 6 2.7191 -0.5768 3.5493 16 6 2.8630 0.4893 4.6373 17 1 3.0870 1.4954 4.2828 18 6 1.9763 0.3576 5.8771 19 6 3.4738 0.0583 5.9723 20 1 4.0991 0.7811 6.4963 21 6 3.8933 -1.4059 6.1173 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 2.0102 -1.3370 3.8775 27 1 3.6882 -1.0399 3.3634 28 1 1.6166 1.2772 6.3385 29 1 1.2907 -0.4888 5.9179 30 1 4.6460 -1.6443 5.3659 31 1 4.3091 -1.5679 7.1118 32 1 3.0240 -2.0485 5.9775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379389837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = -100.218806 kcal Electronic energy + Delta-G solvation = -14003.202301 eV Core-core repulsion = 11542.417717 eV Total energy + Delta-G solvation = -2460.784585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.34391 -38.99603 -37.42793 -35.33494 -32.05071 -30.74859 -28.99811 -27.47382 -24.15511 -22.48531 -21.61744 -20.14464 -18.92341 -18.44983 -17.49872 -17.00320 -16.55034 -15.78896 -14.90326 -14.72272 -14.49389 -14.08249 -13.71813 -13.62721 -13.15817 -13.02355 -12.88264 -12.80060 -12.44570 -12.39480 -12.14533 -12.11676 -11.59970 -11.35459 -10.99450 -10.82587 -10.69424 -10.60738 -8.29823 -6.47122 1.36720 1.41950 1.42831 1.56812 2.02740 2.41511 2.87164 3.00929 3.68420 3.82872 3.96522 4.02623 4.42479 4.47314 4.53276 4.63558 4.68484 4.76697 4.82911 4.94346 5.01286 5.04543 5.16734 5.25392 5.29923 5.47741 5.50248 5.62078 5.91748 6.10124 6.59240 6.98832 7.25629 8.78364 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.060441 B = 0.006200 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.152543 B = 4514.846462 C = 4767.923792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.548 4.548 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.986 3.014 9 H -0.262 1.262 10 H -0.271 1.271 11 H -0.276 1.276 12 O -0.366 6.366 13 C 0.444 3.556 14 O -0.556 6.556 15 C -0.069 4.069 16 C -0.169 4.169 17 H 0.090 0.910 18 C -0.173 4.173 19 C -0.129 4.129 20 H 0.114 0.886 21 C -0.127 4.127 22 H 0.047 0.953 23 H 0.022 0.978 24 H 0.080 0.920 25 H 0.271 0.729 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -5.205 14.046 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.808 3.192 9 H -0.186 1.186 10 H -0.196 1.196 11 H -0.201 1.201 12 O -0.282 6.282 13 C 0.289 3.711 14 O -0.448 6.448 15 C -0.106 4.106 16 C -0.187 4.187 17 H 0.109 0.891 18 C -0.210 4.210 19 C -0.147 4.147 20 H 0.132 0.868 21 C -0.184 4.184 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.858 -4.751 13.862 15.153 hybrid contribution -0.066 0.417 -1.039 1.121 sum 3.793 -4.335 12.823 14.057 Atomic orbital electron populations 1.21973 0.96770 1.00434 1.00725 1.20341 0.92071 0.92002 0.79432 0.97759 1.21341 1.33455 1.13817 0.89951 0.91355 1.25874 0.94706 0.95644 1.02267 1.70030 1.36729 1.23703 1.25197 0.85095 0.78354 0.78399 0.77303 1.18612 1.19587 1.20126 1.86476 1.76256 1.43874 1.21622 1.24623 0.73753 0.85863 0.86817 1.90558 1.50227 1.18830 1.85211 1.20961 1.04532 0.98437 0.86677 1.22080 1.08375 0.99119 0.89161 0.89140 1.23306 0.93869 1.03857 0.99973 1.22532 0.95637 0.99560 0.96977 0.86786 1.21450 1.01907 0.92200 1.02878 0.93394 0.95892 0.90148 0.91977 0.85855 0.85842 0.88542 0.87636 0.91680 0.90601 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.21 12.16 2.56 29.85 0.08 12.24 16 3 H 0.00 0.29 7.16 -2.39 -0.02 0.28 16 4 C -0.55 -31.69 8.89 25.60 0.23 -31.46 16 5 H 0.07 3.86 7.81 -2.91 -0.02 3.83 16 6 C 0.01 0.81 5.31 84.65 0.45 1.26 16 7 N -0.92 -53.57 11.33 21.45 0.24 -53.32 16 8 Si 0.99 43.18 29.54 68.60 2.03 45.21 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 O -0.37 -18.05 9.86 -51.44 -0.51 -18.55 16 13 C 0.44 19.09 7.93 71.24 0.56 19.65 16 14 O -0.56 -27.77 14.78 21.96 0.32 -27.45 16 15 C -0.07 -1.97 5.17 29.85 0.15 -1.82 16 16 C -0.17 -4.47 5.41 -10.79 -0.06 -4.52 16 17 H 0.09 2.91 7.31 -2.39 -0.02 2.89 16 18 C -0.17 -3.65 9.82 30.60 0.30 -3.35 16 19 C -0.13 -2.41 6.41 -10.79 -0.07 -2.48 16 20 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 21 C -0.13 -1.87 9.19 71.98 0.66 -1.21 16 22 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 4.55 6.08 -2.38 -0.01 4.53 16 25 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.12 2.92 7.87 -2.39 -0.02 2.90 16 27 H 0.12 3.01 7.77 -2.39 -0.02 2.99 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.11 1.98 7.94 -2.39 -0.02 1.96 16 30 H 0.06 0.95 7.83 -2.39 -0.02 0.93 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.89 7.90 -2.38 -0.02 0.87 16 Total: -1.00 -67.61 273.54 6.15 -61.46 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.09 Total: 11.15 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 2.98 Total: -18.49 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.24 Total: -53.32 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.18 Total: -46.00 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.61 6.15 -61.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379389837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.762 kcal (2) G-P(sol) polarization free energy of solvation -67.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds