Wall clock time and date at job start Mon Mar 30 2020 02:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50693 * 113.66784 * 139.92946 * 4 3 2 6 6 O 1.20831 * 120.00309 * 262.44264 * 5 4 3 7 7 O 1.34231 * 120.00086 * 82.44039 * 5 4 3 8 8 C 1.45193 * 117.00037 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47183 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47423 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99802 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00330 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00226 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99827 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46860 * 89.99932 * 14 12 10 16 16 H 1.48500 * 109.47069 * 210.00173 * 14 12 10 17 17 H 1.48505 * 109.47094 * 330.00236 * 14 12 10 18 18 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 19 19 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 20 20 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 21 21 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 22 22 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 23 23 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 24 24 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 25 25 H 1.09000 * 113.53827 * 270.81220 * 4 3 2 26 26 H 1.09002 * 109.47856 * 300.00019 * 8 7 5 27 27 H 1.09002 * 109.47530 * 60.00705 * 8 7 5 28 28 H 1.09000 * 109.47306 * 300.00476 * 9 8 7 29 29 H 1.08999 * 109.47100 * 60.00543 * 9 8 7 30 30 H 0.97003 * 119.99824 * 179.97438 * 13 12 10 31 31 H 1.09006 * 113.61506 * 254.52982 * 18 2 1 32 32 H 1.08996 * 113.61642 * 25.43366 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 3.5408 1.8288 -2.0933 6 8 3.0093 1.7280 -3.1738 7 8 4.4417 2.8000 -1.8767 8 6 4.7286 3.6923 -2.9855 9 6 5.7711 4.7251 -2.5525 10 6 6.0685 5.6516 -3.7032 11 1 5.5640 5.5175 -4.6488 12 6 6.9846 6.6705 -3.5490 13 7 7.2437 7.4793 -4.5531 14 14 7.8566 6.9028 -1.9135 15 1 9.1111 6.1083 -1.9042 16 1 8.1794 8.3399 -1.7243 17 1 6.9725 6.4448 -0.8117 18 6 2.1460 -0.1865 -1.3966 19 1 -0.3633 -0.9603 -0.3660 20 1 -0.3633 0.7971 -0.6487 21 1 -0.3634 0.1632 1.0147 22 1 1.9533 -0.6616 0.7559 23 1 1.4945 2.1704 -0.4289 24 1 2.5650 1.7024 0.9626 25 1 4.0711 0.4399 -0.5035 26 1 5.1162 3.1155 -3.8253 27 1 3.8141 4.2032 -3.2869 28 1 5.3841 5.3020 -1.7127 29 1 6.6856 4.2140 -2.2516 30 1 7.8879 8.1963 -4.4444 31 1 2.5651 -1.1795 -1.5599 32 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:10 Heat of formation + Delta-G solvation = -88.421065 kcal Electronic energy + Delta-G solvation = -13751.630362 eV Core-core repulsion = 11291.357365 eV Total energy + Delta-G solvation = -2460.272996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.50084 -38.45847 -36.00547 -33.29842 -30.91707 -30.18950 -26.00365 -25.75600 -24.15852 -20.78625 -20.43786 -19.43090 -17.51486 -16.67594 -16.10309 -15.84714 -15.56167 -14.22371 -13.86175 -13.66620 -13.34812 -12.98297 -12.65180 -12.56308 -12.14348 -11.62766 -11.42467 -11.27007 -11.01140 -10.71362 -10.68318 -10.51227 -10.39811 -9.94993 -9.76200 -9.68224 -9.33971 -8.62193 -6.12749 -4.13881 2.51905 3.16944 3.28024 3.35271 3.39931 4.27626 4.37329 4.38816 4.55329 4.64540 5.16530 5.20834 5.22774 5.36424 5.51637 5.53349 5.60648 5.65969 5.82289 5.90305 5.98380 5.99333 6.03887 6.30292 6.46747 6.83304 7.20948 7.23423 7.62997 8.18950 8.40172 8.88920 9.46909 10.99877 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.063340 B = 0.005514 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.954082 B = 5076.405430 C = 5314.577820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.118 4.118 4 C -0.113 4.113 5 C 0.464 3.536 6 O -0.516 6.516 7 O -0.360 6.360 8 C 0.081 3.919 9 C -0.009 4.009 10 C -0.528 4.528 11 H 0.075 0.925 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.882 3.118 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.263 1.263 18 C -0.117 4.117 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.266 0.734 31 H 0.074 0.926 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 -14.317 11.141 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.155 4.155 4 C -0.132 4.132 5 C 0.307 3.693 6 O -0.405 6.405 7 O -0.276 6.276 8 C 0.008 3.992 9 C -0.047 4.047 10 C -0.566 4.566 11 H 0.093 0.907 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.708 3.292 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.188 1.188 18 C -0.154 4.154 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.112 0.888 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.139 0.861 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.817 -14.136 10.737 20.285 hybrid contribution 0.647 0.326 0.521 0.893 sum -9.169 -13.810 11.257 20.038 Atomic orbital electron populations 1.21716 0.94435 1.02000 1.01788 1.22472 0.96043 0.97153 0.97673 1.23002 0.96427 0.97218 0.98878 1.22512 0.99629 0.95797 0.95293 1.23418 0.76585 0.80666 0.88644 1.90622 1.51284 1.72027 1.26541 1.86497 1.55468 1.40528 1.45156 1.23368 1.00051 0.89661 0.86089 1.19620 0.93431 0.93149 0.98469 1.20857 1.24849 1.12628 0.98228 0.90675 1.24937 0.96126 0.95183 0.96760 1.69898 1.34463 1.17966 1.31221 0.86745 0.80393 0.77405 0.84630 1.20046 1.21153 1.18771 1.23011 0.96690 0.97992 0.97710 0.92411 0.92385 0.92540 0.88850 0.89441 0.90155 0.86068 0.91797 0.91794 0.95408 0.95836 0.92436 0.90730 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.70 37.16 0.36 -0.74 16 2 C -0.12 -0.98 4.35 -89.81 -0.39 -1.37 16 3 C -0.12 -1.22 7.20 -25.83 -0.19 -1.40 16 4 C -0.11 -1.37 4.26 -90.87 -0.39 -1.76 16 5 C 0.46 8.02 7.49 36.00 0.27 8.29 16 6 O -0.52 -10.26 15.65 -18.75 -0.29 -10.55 16 7 O -0.36 -7.05 10.22 -39.26 -0.40 -7.45 16 8 C 0.08 1.78 5.40 37.16 0.20 1.99 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C -0.53 -15.21 9.66 -34.44 -0.33 -15.54 16 11 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 14 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 18 C -0.12 -1.22 6.97 -25.92 -0.18 -1.40 16 19 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 20 H 0.06 0.49 7.98 -51.93 -0.41 0.08 16 21 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.42 8.13 -51.93 -0.42 1.00 16 27 H 0.06 1.42 8.13 -51.93 -0.42 0.99 16 28 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 29 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.17 7.39 -51.93 -0.38 0.79 16 LS Contribution 272.47 15.07 4.11 4.11 Total: -1.00 -31.66 272.47 -6.30 -37.96 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.94 Total: -3.87 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.87 Total: -10.30 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.69 Total: -18.00 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.66 -6.30 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.465 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds