Wall clock time and date at job start Mon Mar 30 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50693 * 113.66784 * 139.92946 * 4 3 2 6 6 O 1.20831 * 120.00309 * 262.44264 * 5 4 3 7 7 O 1.34231 * 120.00086 * 82.44039 * 5 4 3 8 8 C 1.45193 * 117.00037 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47183 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47423 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99802 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00330 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00226 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99827 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46860 * 89.99932 * 14 12 10 16 16 H 1.48500 * 109.47069 * 210.00173 * 14 12 10 17 17 H 1.48505 * 109.47094 * 330.00236 * 14 12 10 18 18 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 19 19 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 20 20 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 21 21 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 22 22 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 23 23 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 24 24 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 25 25 H 1.09000 * 113.53827 * 270.81220 * 4 3 2 26 26 H 1.09002 * 109.47856 * 300.00019 * 8 7 5 27 27 H 1.09002 * 109.47530 * 60.00705 * 8 7 5 28 28 H 1.09000 * 109.47306 * 300.00476 * 9 8 7 29 29 H 1.08999 * 109.47100 * 60.00543 * 9 8 7 30 30 H 0.97003 * 119.99824 * 179.97438 * 13 12 10 31 31 H 1.09006 * 113.61506 * 254.52982 * 18 2 1 32 32 H 1.08996 * 113.61642 * 25.43366 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 3.5408 1.8288 -2.0933 6 8 3.0093 1.7280 -3.1738 7 8 4.4417 2.8000 -1.8767 8 6 4.7286 3.6923 -2.9855 9 6 5.7711 4.7251 -2.5525 10 6 6.0685 5.6516 -3.7032 11 1 5.5640 5.5175 -4.6488 12 6 6.9846 6.6705 -3.5490 13 7 7.2437 7.4793 -4.5531 14 14 7.8566 6.9028 -1.9135 15 1 9.1111 6.1083 -1.9042 16 1 8.1794 8.3399 -1.7243 17 1 6.9725 6.4448 -0.8117 18 6 2.1460 -0.1865 -1.3966 19 1 -0.3633 -0.9603 -0.3660 20 1 -0.3633 0.7971 -0.6487 21 1 -0.3634 0.1632 1.0147 22 1 1.9533 -0.6616 0.7559 23 1 1.4945 2.1704 -0.4289 24 1 2.5650 1.7024 0.9626 25 1 4.0711 0.4399 -0.5035 26 1 5.1162 3.1155 -3.8253 27 1 3.8141 4.2032 -3.2869 28 1 5.3841 5.3020 -1.7127 29 1 6.6856 4.2140 -2.2516 30 1 7.8879 8.1963 -4.4444 31 1 2.5651 -1.1795 -1.5599 32 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:09 Heat of formation + Delta-G solvation = -107.179161 kcal Electronic energy + Delta-G solvation = -13752.443774 eV Core-core repulsion = 11291.357365 eV Total energy + Delta-G solvation = -2461.086408 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.79241 -39.53856 -37.54870 -35.41291 -32.85848 -31.08547 -27.61488 -26.64694 -25.53931 -22.68233 -21.71938 -20.30891 -19.25932 -18.39228 -17.60603 -17.30638 -16.47239 -16.28859 -15.24562 -15.03267 -14.51792 -14.30499 -14.00915 -13.49545 -13.32692 -13.30547 -12.98203 -12.58434 -12.48425 -12.19411 -11.86214 -11.82291 -11.58106 -11.55336 -11.45228 -11.15961 -11.09577 -10.83035 -8.36247 -6.45009 1.14486 1.37274 1.39182 1.52069 1.75695 2.33322 2.98496 3.40599 3.53966 3.69735 3.78397 4.07256 4.12932 4.17868 4.47915 4.58708 4.63511 4.75661 4.81729 4.89241 4.92029 5.03604 5.11549 5.17658 5.25671 5.37205 5.48406 5.55096 5.59387 6.13370 6.60808 6.72421 7.20329 8.79999 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.063340 B = 0.005514 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.954082 B = 5076.405430 C = 5314.577820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.119 4.119 4 C -0.114 4.114 5 C 0.459 3.541 6 O -0.548 6.548 7 O -0.361 6.361 8 C 0.091 3.909 9 C -0.002 4.002 10 C -0.546 4.546 11 H 0.033 0.967 12 C 0.012 3.988 13 N -0.944 5.944 14 Si 0.956 3.044 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.244 1.244 18 C -0.120 4.120 19 H 0.066 0.934 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.120 0.880 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.149 0.851 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.271 0.729 31 H 0.091 0.909 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -15.760 14.244 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.157 4.157 4 C -0.133 4.133 5 C 0.304 3.696 6 O -0.439 6.439 7 O -0.277 6.277 8 C 0.017 3.983 9 C -0.040 4.040 10 C -0.584 4.584 11 H 0.051 0.949 12 C -0.186 4.186 13 N -0.584 5.584 14 Si 0.778 3.222 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.168 1.168 18 C -0.157 4.157 19 H 0.085 0.915 20 H 0.062 0.938 21 H 0.088 0.912 22 H 0.138 0.862 23 H 0.090 0.910 24 H 0.117 0.883 25 H 0.166 0.834 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.635 -15.603 13.845 22.977 hybrid contribution 0.505 0.740 -0.548 1.050 sum -9.129 -14.863 13.297 21.933 Atomic orbital electron populations 1.21732 0.93974 1.02006 1.02372 1.22458 0.96390 0.96029 0.96697 1.23076 0.95657 0.98101 0.98852 1.22885 1.01284 0.95024 0.94083 1.24628 0.75114 0.80233 0.89653 1.90611 1.52194 1.72691 1.28365 1.86496 1.56536 1.40919 1.43745 1.22929 0.98953 0.89722 0.86647 1.19453 0.94583 0.93078 0.96849 1.21125 1.24892 1.14122 0.98211 0.94850 1.25973 0.96855 0.94499 1.01270 1.70044 1.35494 1.18855 1.33988 0.85576 0.79451 0.77825 0.79346 1.18663 1.20452 1.16763 1.23056 0.96036 0.98159 0.98454 0.91547 0.93799 0.91187 0.86185 0.91034 0.88334 0.83354 0.92706 0.92808 0.94620 0.94675 0.91981 0.89013 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.70 71.98 0.70 -1.18 16 2 C -0.10 -1.35 4.35 -10.27 -0.04 -1.39 16 3 C -0.12 -2.16 7.20 31.18 0.22 -1.94 16 4 C -0.11 -2.50 4.26 -10.95 -0.05 -2.55 16 5 C 0.46 15.57 7.49 71.23 0.53 16.10 16 6 O -0.55 -22.14 15.65 21.95 0.34 -21.80 16 7 O -0.36 -13.80 10.22 -51.43 -0.53 -14.33 16 8 C 0.09 4.06 5.40 71.98 0.39 4.45 16 9 C 0.00 -0.11 4.42 29.85 0.13 0.02 16 10 C -0.55 -32.18 9.66 25.60 0.25 -31.93 16 11 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 12 C 0.01 0.71 5.47 84.66 0.46 1.17 16 13 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 14 Si 0.96 43.64 27.47 68.60 1.88 45.52 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 18 C -0.12 -2.26 6.97 31.12 0.22 -2.04 16 19 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 20 H 0.04 0.69 7.98 -2.39 -0.02 0.67 16 21 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 22 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.07 1.53 7.94 -2.39 -0.02 1.51 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.05 2.51 8.13 -2.39 -0.02 2.49 16 27 H 0.05 2.47 8.13 -2.39 -0.02 2.45 16 28 H 0.04 1.68 7.20 -2.39 -0.02 1.66 16 29 H 0.03 1.63 7.57 -2.39 -0.02 1.61 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 1.76 7.39 -2.39 -0.02 1.74 16 Total: -1.00 -69.62 272.47 5.84 -63.78 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.02 Total: 5.00 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 2.81 Total: -19.28 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.18 Total: -36.13 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -69.62 5.84 -63.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.402 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds