Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47157 * 2 1 4 4 H 1.09000 * 109.47064 * 304.97809 * 3 2 1 5 5 C 1.50696 * 109.47101 * 184.97638 * 3 2 1 6 6 H 1.07997 * 119.99426 * 245.44913 * 5 3 2 7 7 C 1.37878 * 120.00036 * 65.45252 * 5 3 2 8 8 N 1.31516 * 119.99922 * 9.49668 * 7 5 3 9 9 Si 1.86798 * 119.99894 * 189.49484 * 7 5 3 10 10 H 1.48494 * 109.47076 * 84.99373 * 9 7 5 11 11 H 1.48504 * 109.47271 * 204.99607 * 9 7 5 12 12 H 1.48502 * 109.47131 * 324.99200 * 9 7 5 13 13 O 1.45202 * 109.46992 * 64.97350 * 3 2 1 14 14 C 1.34230 * 116.99938 * 270.00000 * 13 3 2 15 15 O 1.20822 * 120.00217 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99829 * 180.02562 * 14 13 3 17 17 C 1.53773 * 113.61529 * 180.02562 * 16 14 13 18 18 C 1.53781 * 87.17683 * 220.06138 * 17 16 14 19 19 C 1.53785 * 87.07824 * 25.38819 * 18 17 16 20 20 H 1.09002 * 109.47234 * 60.00636 * 1 2 3 21 21 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47416 * 300.00352 * 1 2 3 23 23 H 1.09003 * 109.47036 * 239.99773 * 2 1 3 24 24 H 1.08996 * 109.46773 * 120.00123 * 2 1 3 25 25 H 0.96998 * 119.99783 * 179.97438 * 8 7 5 26 26 H 1.08997 * 112.90472 * 311.25234 * 16 14 13 27 27 H 1.09001 * 113.61822 * 105.46971 * 17 16 14 28 28 H 1.09002 * 113.61671 * 334.65490 * 17 16 14 29 29 H 1.08992 * 113.61777 * 139.94024 * 18 17 16 30 30 H 1.08999 * 113.61098 * 270.84547 * 18 17 16 31 31 H 1.09001 * 113.61472 * 89.11660 * 19 18 17 32 32 H 1.08991 * 113.61533 * 219.93860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 -0.8420 5 6 3.5419 1.4443 -0.1232 6 1 4.1501 1.8088 0.6914 7 6 4.1396 0.9806 -1.2760 8 7 3.4068 0.7130 -2.3348 9 14 5.9902 0.7327 -1.3339 10 1 6.3273 -0.6072 -0.7897 11 1 6.4587 0.8281 -2.7399 12 1 6.6557 1.7801 -0.5183 13 8 1.6554 2.0919 1.2405 14 6 0.4722 2.7256 1.2551 15 8 -0.2194 2.7370 0.2644 16 6 0.0064 3.4229 2.5073 17 6 -1.3669 4.0992 2.3612 18 6 -0.7952 5.2658 3.1840 19 6 0.5936 4.8352 2.6830 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8273 0.3872 -3.1459 26 1 0.0934 2.7998 3.3973 27 1 -2.1728 3.5642 2.8636 28 1 -1.6138 4.3689 1.3343 29 1 -1.1045 6.2469 2.8240 30 1 -0.9273 5.1475 4.2595 31 1 0.8841 5.3058 1.7437 32 1 1.3707 4.8957 3.4448 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = -86.270522 kcal Electronic energy + Delta-G solvation = -14523.380126 eV Core-core repulsion = 12063.200384 eV Total energy + Delta-G solvation = -2460.179742 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.98389 -37.80361 -35.46437 -33.39702 -31.44660 -27.66267 -26.45821 -25.51882 -23.17556 -21.31081 -19.73732 -18.96040 -17.23267 -16.50833 -15.70446 -15.48457 -14.78146 -14.52141 -13.39942 -12.98150 -12.83197 -12.35791 -12.14616 -11.79560 -11.51022 -11.37853 -11.17786 -10.99520 -10.92280 -10.61633 -10.44891 -10.29761 -10.23767 -9.83413 -9.45142 -9.28181 -8.79311 -8.43979 -6.18449 -4.22013 3.06924 3.26166 3.31465 3.34517 3.78770 4.36179 4.63048 4.72008 4.91124 5.00262 5.14417 5.64539 5.70690 5.84422 5.92613 5.95844 6.03759 6.18062 6.20029 6.27116 6.42861 6.51519 6.85460 6.98842 7.15414 7.24850 7.60172 7.71592 7.92373 8.17689 8.70590 8.96422 9.42184 10.90633 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.041965 B = 0.008418 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.057034 B = 3325.564506 C = 3747.551842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.218 3.782 4 H 0.053 0.947 5 C -0.525 4.525 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.907 3.093 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.355 6.355 14 C 0.459 3.541 15 O -0.518 6.518 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.142 4.142 19 C -0.121 4.121 20 H 0.054 0.946 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.266 0.734 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 4.742 8.955 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.165 3.835 4 H 0.071 0.929 5 C -0.562 4.562 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.272 6.272 14 C 0.302 3.698 15 O -0.408 6.408 16 C -0.134 4.134 17 C -0.158 4.158 18 C -0.179 4.179 19 C -0.159 4.159 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.021 4.647 8.432 11.355 hybrid contribution 0.939 -0.368 -0.259 1.041 sum -5.082 4.280 8.172 10.532 Atomic orbital electron populations 1.21860 0.98078 0.99060 1.01064 1.21915 0.92986 0.99496 1.02179 1.20648 0.95093 0.88531 0.79224 0.92938 1.21005 0.89674 1.43724 1.01845 0.91369 1.24900 0.99061 0.95194 0.94636 1.69993 1.35970 1.44105 1.02210 0.86370 0.84127 0.78904 0.77237 1.20241 1.21068 1.19679 1.86479 1.34523 1.62286 1.43866 1.23158 0.80646 0.76535 0.89438 1.90583 1.55728 1.58578 1.35925 1.22511 0.98378 0.96490 0.95986 1.22870 0.94838 0.96221 1.01873 1.22833 0.96466 0.98710 0.99911 1.22827 0.97196 0.93505 1.02325 0.92667 0.94780 0.94648 0.89325 0.93697 0.92420 0.86659 0.91088 0.88644 0.91047 0.89985 0.89548 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.56 37.16 0.32 -2.85 16 2 C -0.13 -3.18 5.54 -26.73 -0.15 -3.33 16 3 C 0.22 5.89 2.11 -27.88 -0.06 5.83 16 4 H 0.05 1.59 7.10 -51.93 -0.37 1.22 16 5 C -0.52 -14.92 8.82 -34.44 -0.30 -15.22 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C 0.06 1.81 5.16 -17.82 -0.09 1.72 16 8 N -0.89 -25.57 12.16 55.43 0.67 -24.90 16 9 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 O -0.36 -8.63 9.81 -39.26 -0.38 -9.01 16 14 C 0.46 9.73 5.94 36.01 0.21 9.94 16 15 O -0.52 -12.18 13.04 -18.75 -0.24 -12.42 16 16 C -0.11 -1.76 4.27 -90.87 -0.39 -2.15 16 17 C -0.12 -1.58 7.40 -25.92 -0.19 -1.77 16 18 C -0.14 -1.52 8.09 -25.92 -0.21 -1.73 16 19 C -0.12 -1.60 7.64 -25.83 -0.20 -1.80 16 20 H 0.05 1.29 7.79 -51.93 -0.40 0.88 16 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.03 0.75 6.06 -51.93 -0.31 0.44 16 23 H 0.09 2.37 6.80 -51.93 -0.35 2.02 16 24 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.41 7.43 -51.93 -0.39 1.02 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 265.82 15.07 4.01 4.01 Total: -1.00 -30.43 265.82 -6.78 -37.21 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.75 Total: 0.28 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.06 Total: -11.37 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.67 Total: -24.90 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.63 Total: -21.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.43 -6.78 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.059 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds