Wall clock time and date at job start Mon Mar 30 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34237 * 116.99443 * 90.00402 * 13 3 2 15 15 O 1.20822 * 120.00184 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99347 * 180.02562 * 14 13 3 17 17 C 1.53780 * 113.61148 * 279.13182 * 16 14 13 18 18 C 1.53964 * 87.02028 * 220.05323 * 17 16 14 19 19 C 1.53781 * 87.10841 * 25.36468 * 18 17 16 20 20 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 21 21 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 22 22 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 24 24 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.08993 * 112.85436 * 50.33009 * 16 14 13 27 27 H 1.08998 * 113.62169 * 334.56892 * 17 16 14 28 28 H 1.08999 * 113.61582 * 105.47779 * 17 16 14 29 29 H 1.09006 * 113.53314 * 270.81419 * 18 17 16 30 30 H 1.08992 * 113.66932 * 139.93462 * 18 17 16 31 31 H 1.08999 * 113.61201 * 220.09650 * 19 18 17 32 32 H 1.08994 * 113.69246 * 89.19919 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7255 -1.2560 15 8 -0.2191 2.7371 -0.2656 16 6 0.0072 3.4216 -2.5088 17 6 0.6267 4.8153 -2.7055 18 6 -0.7594 5.2742 -3.1939 19 6 -1.3487 4.1302 -2.3520 20 1 -0.3634 0.5139 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3634 -1.0275 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 3.8288 -0.0530 2.9544 26 1 0.0688 2.7876 -3.3932 27 1 0.9407 5.2889 -1.7754 28 1 1.3952 4.8464 -3.4779 29 1 -0.9068 5.1477 -4.2665 30 1 -1.0413 6.2661 -2.8410 31 1 -2.1726 3.6090 -2.8394 32 1 -1.5764 4.4148 -1.3248 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:51 Heat of formation + Delta-G solvation = -102.037404 kcal Electronic energy + Delta-G solvation = -14532.826807 eV Core-core repulsion = 12071.963362 eV Total energy + Delta-G solvation = -2460.863445 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.61059 -39.16666 -37.29400 -35.49270 -33.37201 -29.56118 -27.92258 -26.57004 -25.18850 -22.89991 -21.51535 -20.26131 -19.00392 -18.48318 -17.46439 -17.05485 -16.47373 -16.06367 -15.07777 -14.81291 -14.38404 -13.75922 -13.47269 -13.38062 -13.25929 -13.15026 -12.98748 -12.77305 -12.59710 -12.21244 -12.11157 -11.78328 -11.46336 -11.41961 -11.32120 -11.01613 -10.83216 -10.53126 -8.28856 -6.46299 1.38909 1.40606 1.44013 1.52144 2.10776 2.43635 3.00347 3.51711 3.64475 3.86481 3.91883 4.22058 4.34535 4.37484 4.56489 4.68193 4.77457 4.81607 4.85009 5.01955 5.05882 5.10059 5.14694 5.19921 5.38015 5.50085 5.51028 5.65511 5.97660 6.15079 6.59317 7.03760 7.26697 8.77886 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.041548 B = 0.008486 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.752407 B = 3298.623249 C = 3766.395810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.223 3.777 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.981 3.019 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.263 1.263 13 O -0.366 6.366 14 C 0.450 3.550 15 O -0.548 6.548 16 C -0.119 4.119 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.122 4.122 20 H 0.033 0.967 21 H 0.037 0.963 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.271 0.729 26 H 0.141 0.859 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 5.843 -10.398 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.021 0.979 5 C -0.591 4.591 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.188 1.188 13 O -0.282 6.282 14 C 0.295 3.705 15 O -0.440 6.440 16 C -0.138 4.138 17 C -0.163 4.163 18 C -0.154 4.154 19 C -0.159 4.159 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.159 0.841 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.696 5.724 -9.903 12.778 hybrid contribution 0.806 -0.324 0.849 1.215 sum -4.890 5.401 -9.053 11.621 Atomic orbital electron populations 1.21705 0.96242 1.00614 1.00051 1.21864 0.94519 0.98118 1.02289 1.20334 0.94515 0.89318 0.78846 0.97940 1.21332 0.90637 1.40248 1.06843 0.91678 1.25834 1.04387 0.93807 0.94284 1.70014 1.37592 1.37951 1.09775 0.85259 0.77524 0.78816 0.77975 1.19376 1.20080 1.18790 1.86482 1.36528 1.62944 1.42273 1.24475 0.79186 0.75585 0.91265 1.90560 1.56127 1.59496 1.37785 1.22897 1.00205 0.97166 0.93527 1.22911 0.99371 0.91938 1.02122 1.22830 0.93174 0.98367 1.01072 1.22906 0.94471 0.97176 1.01356 0.94731 0.94412 0.91856 0.93557 0.89613 0.91990 0.84088 0.91608 0.88695 0.86970 0.89671 0.89016 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.57 71.98 0.62 -5.22 16 2 C -0.13 -6.75 5.49 30.59 0.17 -6.58 16 3 C 0.22 12.57 2.25 29.85 0.07 12.64 16 4 H 0.00 0.18 7.16 -2.39 -0.02 0.16 16 5 C -0.55 -32.22 8.89 25.60 0.23 -32.00 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 7 C 0.02 0.93 5.30 84.66 0.45 1.38 16 8 N -0.92 -53.42 11.30 21.45 0.24 -53.18 16 9 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 O -0.37 -18.23 9.81 -51.48 -0.50 -18.73 16 14 C 0.45 19.36 5.94 71.23 0.42 19.78 16 15 O -0.55 -26.68 13.05 21.98 0.29 -26.39 16 16 C -0.12 -3.49 4.25 -11.01 -0.05 -3.53 16 17 C -0.13 -3.09 7.64 31.18 0.24 -2.85 16 18 C -0.12 -2.09 8.09 31.18 0.25 -1.84 16 19 C -0.12 -2.94 7.40 31.12 0.23 -2.71 16 20 H 0.03 1.66 7.80 -2.39 -0.02 1.64 16 21 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 22 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 24 H 0.09 4.84 5.96 -2.39 -0.01 4.83 16 25 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 26 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.08 7.45 -2.39 -0.02 2.06 16 Total: -1.00 -67.40 264.47 5.77 -61.64 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.09 Total: 12.12 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 2.62 Total: -20.93 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.24 Total: -53.18 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.22 Total: -45.12 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.40 5.77 -61.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.399 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds