Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 H 1.08993 * 109.47278 * 54.99900 * 3 2 1 5 5 C 1.50704 * 109.46771 * 175.00063 * 3 2 1 6 6 H 1.07998 * 120.00571 * 119.99773 * 5 3 2 7 7 C 1.37887 * 119.99671 * 299.99295 * 5 3 2 8 8 N 1.31512 * 119.99803 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 120.00130 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47469 * 89.99385 * 9 7 5 11 11 H 1.48491 * 109.47300 * 209.99741 * 9 7 5 12 12 H 1.48507 * 109.47229 * 329.99824 * 9 7 5 13 13 O 1.45193 * 109.46935 * 294.99236 * 3 2 1 14 14 C 1.34231 * 117.00126 * 90.00449 * 13 3 2 15 15 O 1.20833 * 119.99644 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00640 * 179.71955 * 14 13 3 17 17 H 1.08998 * 115.54999 * 326.00634 * 16 14 13 18 18 C 1.53008 * 117.49728 * 111.66541 * 16 14 13 19 19 C 1.52994 * 117.50206 * 180.28717 * 16 14 13 20 20 H 1.08997 * 117.49869 * 0.02562 * 19 16 14 21 21 C 1.53010 * 117.49739 * 145.02358 * 19 16 14 22 22 H 1.08997 * 109.47473 * 300.00217 * 1 2 3 23 23 H 1.09001 * 109.46626 * 60.00747 * 1 2 3 24 24 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47135 * 239.99460 * 2 1 3 26 26 H 1.09001 * 109.46380 * 119.99745 * 2 1 3 27 27 H 0.96998 * 119.99726 * 179.97438 * 8 7 5 28 28 H 1.08991 * 117.49725 * 214.98441 * 18 16 14 29 29 H 1.08997 * 117.49572 * 359.97438 * 18 16 14 30 30 H 1.08999 * 109.47048 * 60.00303 * 21 19 16 31 31 H 1.08997 * 109.46606 * 180.02562 * 21 19 16 32 32 H 1.09002 * 109.46755 * 300.00048 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8795 1.3360 9 14 3.0963 0.1091 2.5702 10 1 2.8753 -1.3271 2.2636 11 1 3.7935 0.2350 3.8752 12 1 1.7876 0.8076 2.6387 13 8 1.6560 2.0915 -1.2407 14 6 0.4728 2.7253 -1.2562 15 8 -0.2189 2.7377 -0.2655 16 6 0.0101 3.4272 -2.5068 17 1 0.7965 3.8832 -3.1083 18 6 -1.1909 2.8343 -3.2465 19 6 -1.3444 4.1369 -2.4587 20 1 -1.9008 4.0965 -1.5223 21 6 -1.4917 5.4330 -3.2584 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 5.8769 0.4818 2.1130 28 1 -1.1947 2.9007 -4.3344 29 1 -1.6460 1.9364 -2.8287 30 1 -1.3096 5.2313 -4.3140 31 1 -2.5007 5.8252 -3.1319 32 1 -0.7695 6.1659 -2.8986 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382114734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -90.822948 kcal Electronic energy + Delta-G solvation = -14463.751129 eV Core-core repulsion = 12003.373979 eV Total energy + Delta-G solvation = -2460.377150 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.64776 -38.81431 -37.18286 -35.54392 -33.95465 -30.08813 -29.50252 -26.06440 -24.60447 -22.67448 -21.76830 -20.93369 -19.31806 -18.57056 -17.73450 -17.29674 -16.46214 -15.51426 -15.12241 -15.04548 -14.45837 -14.16972 -13.90979 -13.80145 -13.42398 -13.22078 -13.16165 -12.90157 -12.59097 -12.34568 -12.05690 -11.65738 -11.57412 -11.38482 -11.21795 -11.17940 -10.99005 -10.76608 -8.47729 -6.56557 1.17694 1.20685 1.28080 1.38073 1.89407 2.16832 2.77100 2.84187 3.66777 3.71250 3.82742 4.06123 4.13217 4.15472 4.28047 4.39473 4.53803 4.73023 4.84244 4.89181 4.92259 4.94823 4.99192 5.05186 5.20178 5.29507 5.32805 5.42340 5.66523 6.13654 6.47066 6.90868 7.09345 8.68342 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.049715 B = 0.008353 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.075305 B = 3351.401450 C = 3594.764663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.200 3.800 4 H 0.028 0.972 5 C -0.543 4.543 6 H 0.045 0.955 7 C 0.031 3.969 8 N -0.929 5.929 9 Si 0.939 3.061 10 H -0.249 1.249 11 H -0.281 1.281 12 H -0.257 1.257 13 O -0.354 6.354 14 C 0.475 3.525 15 O -0.542 6.542 16 C -0.189 4.189 17 H 0.145 0.855 18 C -0.126 4.126 19 C -0.116 4.116 20 H 0.101 0.899 21 C -0.119 4.119 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.276 0.724 28 H 0.141 0.859 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.882 3.104 -8.186 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.145 3.855 4 H 0.045 0.955 5 C -0.581 4.581 6 H 0.063 0.937 7 C -0.169 4.169 8 N -0.567 5.567 9 Si 0.764 3.236 10 H -0.174 1.174 11 H -0.208 1.208 12 H -0.182 1.182 13 O -0.270 6.270 14 C 0.321 3.679 15 O -0.434 6.434 16 C -0.208 4.208 17 H 0.162 0.838 18 C -0.163 4.163 19 C -0.134 4.134 20 H 0.119 0.881 21 C -0.176 4.176 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.879 3.032 -7.776 17.060 hybrid contribution 0.462 -0.376 1.040 1.198 sum -14.417 2.655 -6.736 16.134 Atomic orbital electron populations 1.21805 0.94449 1.02076 1.01356 1.22261 0.96597 0.97322 1.02163 1.20658 0.93941 0.89900 0.80954 0.95461 1.21000 0.89761 1.40045 1.07283 0.93693 1.25572 0.96137 0.95519 0.99649 1.69957 1.10345 1.45401 1.31004 0.85993 0.79205 0.80330 0.78105 1.17378 1.20802 1.18183 1.86483 1.36460 1.62990 1.41043 1.23387 0.79004 0.75536 0.90017 1.90563 1.56061 1.59793 1.36949 1.21999 0.95376 1.07223 0.96217 0.83755 1.23339 0.94881 0.97268 1.00821 1.22584 0.93831 0.95294 1.01729 0.88126 1.21434 1.03116 0.93430 0.99576 0.93573 0.93424 0.90482 0.90835 0.92214 0.91471 0.84093 0.88734 0.90370 0.90154 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 8.57 71.98 0.62 -4.68 16 2 C -0.15 -6.58 5.14 30.59 0.16 -6.42 16 3 C 0.20 10.39 1.84 29.85 0.05 10.45 16 4 H 0.03 1.52 6.21 -2.39 -0.01 1.50 16 5 C -0.54 -32.76 9.48 25.60 0.24 -32.51 16 6 H 0.04 2.99 8.06 -2.91 -0.02 2.97 16 7 C 0.03 1.84 5.45 84.66 0.46 2.30 16 8 N -0.93 -57.60 13.96 21.45 0.30 -57.30 16 9 Si 0.94 44.89 24.41 68.60 1.67 46.57 16 10 H -0.25 -10.92 6.83 99.48 0.68 -10.24 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.26 -12.11 6.53 99.48 0.65 -11.46 16 13 O -0.35 -16.91 9.81 -51.42 -0.50 -17.41 16 14 C 0.48 19.22 6.20 71.23 0.44 19.66 16 15 O -0.54 -23.95 13.40 21.94 0.29 -23.66 16 16 C -0.19 -5.37 6.02 -11.54 -0.07 -5.44 16 17 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 18 C -0.13 -2.61 9.88 30.60 0.30 -2.30 16 19 C -0.12 -2.59 5.92 -10.79 -0.06 -2.65 16 20 H 0.10 2.60 7.67 -2.39 -0.02 2.59 16 21 C -0.12 -1.82 10.19 71.99 0.73 -1.09 16 22 H 0.05 1.83 7.80 -2.39 -0.02 1.81 16 23 H 0.05 1.76 6.06 -2.39 -0.01 1.74 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.06 2.72 3.21 -2.39 -0.01 2.71 16 27 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.14 1.95 8.05 -2.39 -0.02 1.93 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 0.93 7.90 -2.39 -0.02 0.91 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -69.81 262.84 5.65 -64.16 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.01 Total: 10.34 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 2.88 Total: -22.69 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.30 Total: -57.30 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.21 Total: -41.07 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.57 kcal Total: -69.81 5.65 -64.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382114734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.667 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds