Wall clock time and date at job start Mon Mar 30 2020 02:57:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 120.00070 * 2 1
4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1
5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1
6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1
7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1
9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1
10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2
11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7
12 12 C 1.47484 * 110.99773 * 74.03393 * 11 10 9
13 13 C 1.53516 * 87.93162 * 138.70049 * 12 11 10
14 14 C 1.52999 * 114.17147 * 220.32406 * 13 12 11
15 15 C 1.50699 * 109.47196 * 268.84421 * 14 13 12
16 16 N 1.34774 * 119.99559 * 179.97438 * 15 14 13
17 17 O 1.21275 * 120.00342 * 359.97438 * 15 14 13
18 18 C 1.47482 * 110.99764 * 169.99993 * 11 10 9
19 19 H 0.97000 * 119.99684 * 359.97438 * 1 2 3
20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2
21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2
22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7
23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7
24 24 H 1.09002 * 113.46980 * 253.46672 * 12 11 10
25 25 H 1.08997 * 113.47937 * 23.93233 * 12 11 10
26 26 H 1.09000 * 114.34380 * 87.63201 * 13 12 11
27 27 H 1.09011 * 109.46740 * 28.84227 * 14 13 12
28 28 H 1.08998 * 109.46933 * 148.83709 * 14 13 12
29 29 H 0.97001 * 120.00573 * 359.97438 * 16 15 14
30 30 H 0.97002 * 120.00033 * 179.97438 * 16 15 14
31 31 H 1.08999 * 113.47954 * 336.06479 * 18 11 10
32 32 H 1.09004 * 113.47420 * 106.52893 * 18 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 6 4.0215 -2.6366 -0.0010
11 7 5.4905 -2.6366 -0.0009
12 6 6.0189 -2.2577 1.3228
13 6 7.0751 -3.3591 1.1547
14 6 7.3575 -4.1562 2.4297
15 6 8.4892 -3.5095 3.1861
16 7 8.9135 -4.0422 4.3491
17 8 9.0182 -2.5098 2.7483
18 6 6.0189 -3.9925 0.2383
19 1 -0.4850 0.8401 0.0004
20 1 3.8751 -0.6805 0.8889
21 1 3.8745 -0.6801 -0.8910
22 1 3.6584 -3.1503 0.8892
23 1 3.6578 -3.1506 -0.8908
24 1 6.4401 -1.2528 1.3508
25 1 5.3214 -2.4460 2.1390
26 1 7.9799 -3.0388 0.6381
27 1 6.4643 -4.1706 3.0545
28 1 7.6331 -5.1773 2.1662
29 1 8.4902 -4.8415 4.6996
30 1 9.6422 -3.6262 4.8359
31 1 5.3215 -4.6438 0.7650
32 1 6.4401 -4.4579 -0.6529
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000382193618.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:44
Heat of formation + Delta-G solvation = -16.413374 kcal
Electronic energy + Delta-G solvation = -13858.426293 eV
Core-core repulsion = 11433.568535 eV
Total energy + Delta-G solvation = -2424.857757 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-40.29069 -38.94163 -33.85290 -33.65432 -31.98616 -29.96871 -26.45467 -25.61519
-23.11871 -20.91226 -19.90937 -19.45111 -17.58964 -16.81980 -16.70068 -15.66549
-15.15926 -14.68825 -14.28418 -13.92292 -13.81887 -12.90680 -12.59844 -12.34167
-12.15153 -11.60647 -11.23946 -11.06249 -10.64337 -10.35928 -10.02896 -10.00158
-9.88371 -9.69885 -9.57676 -9.19421 -8.51618 -8.37678 -6.02647 -4.00814
2.52250 3.35055 3.35920 3.42442 3.49247 4.36755 4.49203 4.50923
4.81068 4.88822 5.32351 5.36229 5.37377 5.50426 5.68059 5.72282
5.85972 5.96286 6.15395 6.22085 6.46980 6.57267 6.71224 6.92190
7.12092 7.21186 7.43708 7.64155 7.85605 8.11252 8.54527 9.00906
9.60335 11.10653
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.045559 B = 0.006097 C = 0.005768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 614.442630 B = 4590.982610 C = 4852.913434
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.068 3.932
3 Si 0.880 3.120
4 H -0.276 1.276
5 H -0.288 1.288
6 H -0.265 1.265
7 C -0.521 4.521
8 H 0.070 0.930
9 C -0.007 4.007
10 C 0.037 3.963
11 N -0.475 5.475
12 C 0.009 3.991
13 C -0.104 4.104
14 C -0.133 4.133
15 C 0.516 3.484
16 N -0.862 5.862
17 O -0.537 6.537
18 C 0.000 4.000
19 H 0.263 0.737
20 H 0.015 0.985
21 H 0.020 0.980
22 H 0.033 0.967
23 H 0.069 0.931
24 H 0.081 0.919
25 H 0.066 0.934
26 H 0.109 0.891
27 H 0.096 0.904
28 H 0.097 0.903
29 H 0.400 0.600
30 H 0.399 0.601
31 H 0.065 0.935
32 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.915 -10.861 7.863 20.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.133 4.133
3 Si 0.708 3.292
4 H -0.202 1.202
5 H -0.215 1.215
6 H -0.189 1.189
7 C -0.560 4.560
8 H 0.089 0.911
9 C -0.045 4.045
10 C -0.091 4.091
11 N -0.197 5.197
12 C -0.120 4.120
13 C -0.124 4.124
14 C -0.174 4.174
15 C 0.302 3.698
16 N -0.426 5.426
17 O -0.413 6.413
18 C -0.129 4.129
19 H 0.073 0.927
20 H 0.033 0.967
21 H 0.038 0.962
22 H 0.052 0.948
23 H 0.087 0.913
24 H 0.100 0.900
25 H 0.085 0.915
26 H 0.127 0.873
27 H 0.114 0.886
28 H 0.115 0.885
29 H 0.228 0.772
30 H 0.229 0.771
31 H 0.084 0.916
32 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 16.102 -9.710 6.787 19.991
hybrid contribution -0.051 0.183 1.169 1.184
sum 16.052 -9.527 7.956 20.291
Atomic orbital electron populations
1.69916 1.06307 1.26910 1.51227 1.24990 0.94712 0.99186 0.94426
0.86760 0.80362 0.83428 0.78685 1.20165 1.21451 1.18931 1.21089
0.89402 0.94486 1.51018 0.91140 1.19498 0.96543 0.91598 0.96842
1.22641 0.85605 1.00714 1.00163 1.68951 1.11761 1.11670 1.27339
1.23789 0.95638 1.00057 0.92482 1.22599 0.98680 0.96687 0.94401
1.21699 0.97443 1.00762 0.97461 1.20783 0.84109 0.84071 0.80864
1.43948 1.40462 1.32930 1.25257 1.90762 1.57668 1.25155 1.67705
1.23846 0.96469 0.93695 0.98908 0.92740 0.96720 0.96180 0.94837
0.91287 0.90014 0.91542 0.87256 0.88601 0.88493 0.77177 0.77114
0.91646 0.90148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16
2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16
3 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16
4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
6 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16
7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.62 16
8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16
9 C -0.01 -0.18 4.15 -27.88 -0.12 -0.29 16
10 C 0.04 0.77 4.76 -3.82 -0.02 0.75 16
11 N -0.48 -8.70 6.41 -244.62 -1.57 -10.27 16
12 C 0.01 0.16 6.57 -7.54 -0.05 0.11 16
13 C -0.10 -1.37 3.51 -90.09 -0.32 -1.69 16
14 C -0.13 -1.25 5.61 -27.88 -0.16 -1.41 16
15 C 0.52 5.63 8.10 -10.99 -0.09 5.54 16
16 N -0.86 -5.70 8.87 31.22 0.28 -5.42 16
17 O -0.54 -8.48 16.57 5.56 0.09 -8.38 16
18 C 0.00 0.00 7.29 -7.55 -0.05 -0.05 16
19 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
20 H 0.01 0.37 6.72 -51.93 -0.35 0.02 16
21 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16
22 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16
23 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
24 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16
25 H 0.07 1.08 7.43 -51.93 -0.39 0.69 16
26 H 0.11 1.57 7.63 -51.93 -0.40 1.18 16
27 H 0.10 0.80 7.81 -51.92 -0.41 0.40 16
28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.40 1.36 8.83 -40.82 -0.36 1.00 16
30 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16
31 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16
32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
LS Contribution 268.24 15.07 4.04 4.04
Total: -1.00 -34.99 268.24 -7.01 -42.00
By element:
Atomic # 1 Polarization: 3.16 SS G_CDS: -4.73 Total: -1.57 kcal
Atomic # 6 Polarization: -9.49 SS G_CDS: -1.23 Total: -10.72 kcal
Atomic # 7 Polarization: -42.79 SS G_CDS: -0.52 Total: -43.31 kcal
Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.38 kcal
Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -34.99 -7.01 -42.00 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000382193618.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.586 kcal
(2) G-P(sol) polarization free energy of solvation -34.990 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.413 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds