Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47484 * 110.99773 * 74.03393 * 11 10 9 13 13 C 1.53516 * 87.93162 * 138.70049 * 12 11 10 14 14 C 1.52999 * 114.17147 * 220.32406 * 13 12 11 15 15 C 1.50699 * 109.47196 * 268.84421 * 14 13 12 16 16 N 1.34774 * 119.99559 * 179.97438 * 15 14 13 17 17 O 1.21275 * 120.00342 * 359.97438 * 15 14 13 18 18 C 1.47482 * 110.99764 * 169.99993 * 11 10 9 19 19 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 1.09002 * 113.46980 * 253.46672 * 12 11 10 25 25 H 1.08997 * 113.47937 * 23.93233 * 12 11 10 26 26 H 1.09000 * 114.34380 * 87.63201 * 13 12 11 27 27 H 1.09011 * 109.46740 * 28.84227 * 14 13 12 28 28 H 1.08998 * 109.46933 * 148.83709 * 14 13 12 29 29 H 0.97001 * 120.00573 * 359.97438 * 16 15 14 30 30 H 0.97002 * 120.00033 * 179.97438 * 16 15 14 31 31 H 1.08999 * 113.47954 * 336.06479 * 18 11 10 32 32 H 1.09004 * 113.47420 * 106.52893 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6366 -0.0009 12 6 6.0189 -2.2577 1.3228 13 6 7.0751 -3.3591 1.1547 14 6 7.3575 -4.1562 2.4297 15 6 8.4892 -3.5095 3.1861 16 7 8.9135 -4.0422 4.3491 17 8 9.0182 -2.5098 2.7483 18 6 6.0189 -3.9925 0.2383 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6805 0.8889 21 1 3.8745 -0.6801 -0.8910 22 1 3.6584 -3.1503 0.8892 23 1 3.6578 -3.1506 -0.8908 24 1 6.4401 -1.2528 1.3508 25 1 5.3214 -2.4460 2.1390 26 1 7.9799 -3.0388 0.6381 27 1 6.4643 -4.1706 3.0545 28 1 7.6331 -5.1773 2.1662 29 1 8.4902 -4.8415 4.6996 30 1 9.6422 -3.6262 4.8359 31 1 5.3215 -4.6438 0.7650 32 1 6.4401 -4.4579 -0.6529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382193618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = -16.413374 kcal Electronic energy + Delta-G solvation = -13858.426293 eV Core-core repulsion = 11433.568535 eV Total energy + Delta-G solvation = -2424.857757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.29069 -38.94163 -33.85290 -33.65432 -31.98616 -29.96871 -26.45467 -25.61519 -23.11871 -20.91226 -19.90937 -19.45111 -17.58964 -16.81980 -16.70068 -15.66549 -15.15926 -14.68825 -14.28418 -13.92292 -13.81887 -12.90680 -12.59844 -12.34167 -12.15153 -11.60647 -11.23946 -11.06249 -10.64337 -10.35928 -10.02896 -10.00158 -9.88371 -9.69885 -9.57676 -9.19421 -8.51618 -8.37678 -6.02647 -4.00814 2.52250 3.35055 3.35920 3.42442 3.49247 4.36755 4.49203 4.50923 4.81068 4.88822 5.32351 5.36229 5.37377 5.50426 5.68059 5.72282 5.85972 5.96286 6.15395 6.22085 6.46980 6.57267 6.71224 6.92190 7.12092 7.21186 7.43708 7.64155 7.85605 8.11252 8.54527 9.00906 9.60335 11.10653 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045559 B = 0.006097 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.442630 B = 4590.982610 C = 4852.913434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.007 4.007 10 C 0.037 3.963 11 N -0.475 5.475 12 C 0.009 3.991 13 C -0.104 4.104 14 C -0.133 4.133 15 C 0.516 3.484 16 N -0.862 5.862 17 O -0.537 6.537 18 C 0.000 4.000 19 H 0.263 0.737 20 H 0.015 0.985 21 H 0.020 0.980 22 H 0.033 0.967 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.400 0.600 30 H 0.399 0.601 31 H 0.065 0.935 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.915 -10.861 7.863 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.045 4.045 10 C -0.091 4.091 11 N -0.197 5.197 12 C -0.120 4.120 13 C -0.124 4.124 14 C -0.174 4.174 15 C 0.302 3.698 16 N -0.426 5.426 17 O -0.413 6.413 18 C -0.129 4.129 19 H 0.073 0.927 20 H 0.033 0.967 21 H 0.038 0.962 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.228 0.772 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.102 -9.710 6.787 19.991 hybrid contribution -0.051 0.183 1.169 1.184 sum 16.052 -9.527 7.956 20.291 Atomic orbital electron populations 1.69916 1.06307 1.26910 1.51227 1.24990 0.94712 0.99186 0.94426 0.86760 0.80362 0.83428 0.78685 1.20165 1.21451 1.18931 1.21089 0.89402 0.94486 1.51018 0.91140 1.19498 0.96543 0.91598 0.96842 1.22641 0.85605 1.00714 1.00163 1.68951 1.11761 1.11670 1.27339 1.23789 0.95638 1.00057 0.92482 1.22599 0.98680 0.96687 0.94401 1.21699 0.97443 1.00762 0.97461 1.20783 0.84109 0.84071 0.80864 1.43948 1.40462 1.32930 1.25257 1.90762 1.57668 1.25155 1.67705 1.23846 0.96469 0.93695 0.98908 0.92740 0.96720 0.96180 0.94837 0.91287 0.90014 0.91542 0.87256 0.88601 0.88493 0.77177 0.77114 0.91646 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.62 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.18 4.15 -27.88 -0.12 -0.29 16 10 C 0.04 0.77 4.76 -3.82 -0.02 0.75 16 11 N -0.48 -8.70 6.41 -244.62 -1.57 -10.27 16 12 C 0.01 0.16 6.57 -7.54 -0.05 0.11 16 13 C -0.10 -1.37 3.51 -90.09 -0.32 -1.69 16 14 C -0.13 -1.25 5.61 -27.88 -0.16 -1.41 16 15 C 0.52 5.63 8.10 -10.99 -0.09 5.54 16 16 N -0.86 -5.70 8.87 31.22 0.28 -5.42 16 17 O -0.54 -8.48 16.57 5.56 0.09 -8.38 16 18 C 0.00 0.00 7.29 -7.55 -0.05 -0.05 16 19 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 20 H 0.01 0.37 6.72 -51.93 -0.35 0.02 16 21 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 22 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 23 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 24 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 25 H 0.07 1.08 7.43 -51.93 -0.39 0.69 16 26 H 0.11 1.57 7.63 -51.93 -0.40 1.18 16 27 H 0.10 0.80 7.81 -51.92 -0.41 0.40 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.40 1.36 8.83 -40.82 -0.36 1.00 16 30 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16 31 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 268.24 15.07 4.04 4.04 Total: -1.00 -34.99 268.24 -7.01 -42.00 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.73 Total: -1.57 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.23 Total: -10.72 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.52 Total: -43.31 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.99 -7.01 -42.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382193618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.586 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds