Wall clock time and date at job start Mon Mar 30 2020 02:57:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 120.00070 * 2 1
4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1
5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1
6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1
7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1
9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1
10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2
11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7
12 12 C 1.47484 * 110.99773 * 74.03393 * 11 10 9
13 13 C 1.53516 * 87.93162 * 138.70049 * 12 11 10
14 14 C 1.52999 * 114.17147 * 220.32406 * 13 12 11
15 15 C 1.50699 * 109.47196 * 268.84421 * 14 13 12
16 16 N 1.34774 * 119.99559 * 179.97438 * 15 14 13
17 17 O 1.21275 * 120.00342 * 359.97438 * 15 14 13
18 18 C 1.47482 * 110.99764 * 169.99993 * 11 10 9
19 19 H 0.97000 * 119.99684 * 359.97438 * 1 2 3
20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2
21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2
22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7
23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7
24 24 H 1.09002 * 113.46980 * 253.46672 * 12 11 10
25 25 H 1.08997 * 113.47937 * 23.93233 * 12 11 10
26 26 H 1.09000 * 114.34380 * 87.63201 * 13 12 11
27 27 H 1.09011 * 109.46740 * 28.84227 * 14 13 12
28 28 H 1.08998 * 109.46933 * 148.83709 * 14 13 12
29 29 H 0.97001 * 120.00573 * 359.97438 * 16 15 14
30 30 H 0.97002 * 120.00033 * 179.97438 * 16 15 14
31 31 H 1.08999 * 113.47954 * 336.06479 * 18 11 10
32 32 H 1.09004 * 113.47420 * 106.52893 * 18 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 6 4.0215 -2.6366 -0.0010
11 7 5.4905 -2.6366 -0.0009
12 6 6.0189 -2.2577 1.3228
13 6 7.0751 -3.3591 1.1547
14 6 7.3575 -4.1562 2.4297
15 6 8.4892 -3.5095 3.1861
16 7 8.9135 -4.0422 4.3491
17 8 9.0182 -2.5098 2.7483
18 6 6.0189 -3.9925 0.2383
19 1 -0.4850 0.8401 0.0004
20 1 3.8751 -0.6805 0.8889
21 1 3.8745 -0.6801 -0.8910
22 1 3.6584 -3.1503 0.8892
23 1 3.6578 -3.1506 -0.8908
24 1 6.4401 -1.2528 1.3508
25 1 5.3214 -2.4460 2.1390
26 1 7.9799 -3.0388 0.6381
27 1 6.4643 -4.1706 3.0545
28 1 7.6331 -5.1773 2.1662
29 1 8.4902 -4.8415 4.6996
30 1 9.6422 -3.6262 4.8359
31 1 5.3215 -4.6438 0.7650
32 1 6.4401 -4.4579 -0.6529
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000382193618.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:44
Heat of formation + Delta-G solvation = -46.422132 kcal
Electronic energy + Delta-G solvation = -13859.727570 eV
Core-core repulsion = 11433.568535 eV
Total energy + Delta-G solvation = -2426.159035 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-41.41371 -39.94932 -35.64056 -34.60230 -33.71945 -31.43885 -28.02864 -26.84299
-24.77402 -22.23422 -21.32242 -20.51774 -19.02951 -18.26969 -17.56257 -16.78386
-16.36380 -16.27231 -15.94517 -15.37012 -15.01794 -14.63028 -14.23541 -13.57372
-13.44523 -13.20911 -12.95682 -12.43322 -12.23175 -11.91451 -11.69130 -11.52992
-11.32121 -11.23001 -10.92452 -10.80174 -10.58589 -9.75948 -8.33734 -6.37508
1.32925 1.33444 1.46707 1.72775 2.32684 2.66750 3.01722 3.15714
3.48132 3.84526 4.04895 4.23195 4.36746 4.41711 4.54942 4.57358
4.68147 4.79507 4.82101 4.90198 4.94163 5.26347 5.28950 5.41119
5.57338 5.60573 5.96695 6.17910 6.26589 6.54538 6.69353 7.27701
7.43896 8.82726
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.045559 B = 0.006097 C = 0.005768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 614.442630 B = 4590.982610 C = 4852.913434
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.947 5.947
2 C 0.012 3.988
3 Si 0.947 3.053
4 H -0.267 1.267
5 H -0.278 1.278
6 H -0.257 1.257
7 C -0.532 4.532
8 H 0.038 0.962
9 C -0.002 4.002
10 C 0.049 3.951
11 N -0.500 5.500
12 C 0.000 4.000
13 C -0.087 4.087
14 C -0.126 4.126
15 C 0.512 3.488
16 N -0.840 5.840
17 O -0.596 6.596
18 C 0.008 3.992
19 H 0.268 0.732
20 H 0.012 0.988
21 H 0.012 0.988
22 H 0.038 0.962
23 H 0.063 0.937
24 H 0.058 0.942
25 H 0.071 0.929
26 H 0.094 0.906
27 H 0.113 0.887
28 H 0.135 0.865
29 H 0.419 0.581
30 H 0.404 0.596
31 H 0.085 0.915
32 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.452 -11.876 8.764 22.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.587 5.587
2 C -0.186 4.186
3 Si 0.770 3.230
4 H -0.193 1.193
5 H -0.204 1.204
6 H -0.181 1.181
7 C -0.571 4.571
8 H 0.057 0.943
9 C -0.039 4.039
10 C -0.079 4.079
11 N -0.222 5.222
12 C -0.129 4.129
13 C -0.106 4.106
14 C -0.166 4.166
15 C 0.298 3.702
16 N -0.404 5.404
17 O -0.477 6.477
18 C -0.121 4.121
19 H 0.077 0.923
20 H 0.030 0.970
21 H 0.031 0.969
22 H 0.056 0.944
23 H 0.082 0.918
24 H 0.077 0.923
25 H 0.089 0.911
26 H 0.113 0.887
27 H 0.131 0.869
28 H 0.153 0.847
29 H 0.250 0.750
30 H 0.235 0.765
31 H 0.103 0.897
32 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 17.647 -10.784 7.728 22.078
hybrid contribution -0.546 0.407 0.920 1.145
sum 17.101 -10.377 8.648 21.792
Atomic orbital electron populations
1.70041 1.08017 1.28215 1.52434 1.25888 0.95553 1.03124 0.94018
0.85711 0.79229 0.78808 0.79216 1.19253 1.20374 1.18076 1.21396
0.91608 0.93403 1.50658 0.94344 1.19376 0.93807 0.94616 0.96134
1.22363 0.87815 0.97634 1.00130 1.68907 1.09384 1.15274 1.28682
1.23876 0.96958 1.00248 0.91827 1.22391 0.97012 0.95244 0.95972
1.21688 0.97652 1.01655 0.95580 1.21072 0.84098 0.83396 0.81628
1.43766 1.39899 1.32989 1.23751 1.90750 1.59729 1.27789 1.69388
1.23927 0.96416 0.91788 0.99965 0.92325 0.96951 0.96938 0.94387
0.91842 0.92324 0.91112 0.88740 0.86853 0.84709 0.74955 0.76493
0.89700 0.88728
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16
2 C 0.01 0.70 5.47 84.66 0.46 1.16 16
3 Si 0.95 46.64 27.47 68.60 1.88 48.53 16
4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16
5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
6 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16
7 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16
8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16
9 C 0.00 -0.08 4.15 29.85 0.12 0.04 16
10 C 0.05 2.02 4.76 86.30 0.41 2.43 16
11 N -0.50 -17.74 6.41 -927.84 -5.95 -23.69 16
12 C 0.00 0.00 6.57 83.57 0.55 0.55 16
13 C -0.09 -2.10 3.51 -10.45 -0.04 -2.14 16
14 C -0.13 -1.92 5.61 29.85 0.17 -1.75 16
15 C 0.51 10.00 8.10 87.66 0.71 10.71 16
16 N -0.84 -8.64 8.87 -173.54 -1.54 -10.18 16
17 O -0.60 -18.43 16.57 -3.01 -0.05 -18.48 16
18 C 0.01 0.19 7.29 83.57 0.61 0.80 16
19 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16
20 H 0.01 0.62 6.72 -2.39 -0.02 0.60 16
21 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16
22 H 0.04 1.51 7.56 -2.39 -0.02 1.49 16
23 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16
24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16
25 H 0.07 2.19 7.43 -2.39 -0.02 2.18 16
26 H 0.09 2.61 7.63 -2.39 -0.02 2.60 16
27 H 0.11 1.41 7.81 -2.38 -0.02 1.39 16
28 H 0.14 1.10 8.14 -2.39 -0.02 1.09 16
29 H 0.42 1.23 8.83 -92.71 -0.82 0.41 16
30 H 0.40 3.81 8.93 -92.71 -0.83 2.98 16
31 H 0.08 1.82 7.73 -2.39 -0.02 1.80 16
32 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16
Total: -1.00 -77.33 268.24 -2.69 -80.02
By element:
Atomic # 1 Polarization: 4.01 SS G_CDS: -0.58 Total: 3.43 kcal
Atomic # 6 Polarization: -22.91 SS G_CDS: 3.24 Total: -19.66 kcal
Atomic # 7 Polarization: -86.65 SS G_CDS: -7.19 Total: -93.84 kcal
Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal
Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal
Total: -77.33 -2.69 -80.02 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000382193618.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.601 kcal
(2) G-P(sol) polarization free energy of solvation -77.331 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds