Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47484 * 110.99773 * 74.03393 * 11 10 9 13 13 C 1.53516 * 87.93162 * 138.70049 * 12 11 10 14 14 C 1.52999 * 114.17147 * 220.32406 * 13 12 11 15 15 C 1.50699 * 109.47196 * 268.84421 * 14 13 12 16 16 N 1.34774 * 119.99559 * 179.97438 * 15 14 13 17 17 O 1.21275 * 120.00342 * 359.97438 * 15 14 13 18 18 C 1.47482 * 110.99764 * 169.99993 * 11 10 9 19 19 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 1.09002 * 113.46980 * 253.46672 * 12 11 10 25 25 H 1.08997 * 113.47937 * 23.93233 * 12 11 10 26 26 H 1.09000 * 114.34380 * 87.63201 * 13 12 11 27 27 H 1.09011 * 109.46740 * 28.84227 * 14 13 12 28 28 H 1.08998 * 109.46933 * 148.83709 * 14 13 12 29 29 H 0.97001 * 120.00573 * 359.97438 * 16 15 14 30 30 H 0.97002 * 120.00033 * 179.97438 * 16 15 14 31 31 H 1.08999 * 113.47954 * 336.06479 * 18 11 10 32 32 H 1.09004 * 113.47420 * 106.52893 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6366 -0.0009 12 6 6.0189 -2.2577 1.3228 13 6 7.0751 -3.3591 1.1547 14 6 7.3575 -4.1562 2.4297 15 6 8.4892 -3.5095 3.1861 16 7 8.9135 -4.0422 4.3491 17 8 9.0182 -2.5098 2.7483 18 6 6.0189 -3.9925 0.2383 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6805 0.8889 21 1 3.8745 -0.6801 -0.8910 22 1 3.6584 -3.1503 0.8892 23 1 3.6578 -3.1506 -0.8908 24 1 6.4401 -1.2528 1.3508 25 1 5.3214 -2.4460 2.1390 26 1 7.9799 -3.0388 0.6381 27 1 6.4643 -4.1706 3.0545 28 1 7.6331 -5.1773 2.1662 29 1 8.4902 -4.8415 4.6996 30 1 9.6422 -3.6262 4.8359 31 1 5.3215 -4.6438 0.7650 32 1 6.4401 -4.4579 -0.6529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382193618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = -46.422132 kcal Electronic energy + Delta-G solvation = -13859.727570 eV Core-core repulsion = 11433.568535 eV Total energy + Delta-G solvation = -2426.159035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.41371 -39.94932 -35.64056 -34.60230 -33.71945 -31.43885 -28.02864 -26.84299 -24.77402 -22.23422 -21.32242 -20.51774 -19.02951 -18.26969 -17.56257 -16.78386 -16.36380 -16.27231 -15.94517 -15.37012 -15.01794 -14.63028 -14.23541 -13.57372 -13.44523 -13.20911 -12.95682 -12.43322 -12.23175 -11.91451 -11.69130 -11.52992 -11.32121 -11.23001 -10.92452 -10.80174 -10.58589 -9.75948 -8.33734 -6.37508 1.32925 1.33444 1.46707 1.72775 2.32684 2.66750 3.01722 3.15714 3.48132 3.84526 4.04895 4.23195 4.36746 4.41711 4.54942 4.57358 4.68147 4.79507 4.82101 4.90198 4.94163 5.26347 5.28950 5.41119 5.57338 5.60573 5.96695 6.17910 6.26589 6.54538 6.69353 7.27701 7.43896 8.82726 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045559 B = 0.006097 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.442630 B = 4590.982610 C = 4852.913434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.532 4.532 8 H 0.038 0.962 9 C -0.002 4.002 10 C 0.049 3.951 11 N -0.500 5.500 12 C 0.000 4.000 13 C -0.087 4.087 14 C -0.126 4.126 15 C 0.512 3.488 16 N -0.840 5.840 17 O -0.596 6.596 18 C 0.008 3.992 19 H 0.268 0.732 20 H 0.012 0.988 21 H 0.012 0.988 22 H 0.038 0.962 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.135 0.865 29 H 0.419 0.581 30 H 0.404 0.596 31 H 0.085 0.915 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.452 -11.876 8.764 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.571 4.571 8 H 0.057 0.943 9 C -0.039 4.039 10 C -0.079 4.079 11 N -0.222 5.222 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.166 4.166 15 C 0.298 3.702 16 N -0.404 5.404 17 O -0.477 6.477 18 C -0.121 4.121 19 H 0.077 0.923 20 H 0.030 0.970 21 H 0.031 0.969 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.153 0.847 29 H 0.250 0.750 30 H 0.235 0.765 31 H 0.103 0.897 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.647 -10.784 7.728 22.078 hybrid contribution -0.546 0.407 0.920 1.145 sum 17.101 -10.377 8.648 21.792 Atomic orbital electron populations 1.70041 1.08017 1.28215 1.52434 1.25888 0.95553 1.03124 0.94018 0.85711 0.79229 0.78808 0.79216 1.19253 1.20374 1.18076 1.21396 0.91608 0.93403 1.50658 0.94344 1.19376 0.93807 0.94616 0.96134 1.22363 0.87815 0.97634 1.00130 1.68907 1.09384 1.15274 1.28682 1.23876 0.96958 1.00248 0.91827 1.22391 0.97012 0.95244 0.95972 1.21688 0.97652 1.01655 0.95580 1.21072 0.84098 0.83396 0.81628 1.43766 1.39899 1.32989 1.23751 1.90750 1.59729 1.27789 1.69388 1.23927 0.96416 0.91788 0.99965 0.92325 0.96951 0.96938 0.94387 0.91842 0.92324 0.91112 0.88740 0.86853 0.84709 0.74955 0.76493 0.89700 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.95 46.64 27.47 68.60 1.88 48.53 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 7 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C 0.00 -0.08 4.15 29.85 0.12 0.04 16 10 C 0.05 2.02 4.76 86.30 0.41 2.43 16 11 N -0.50 -17.74 6.41 -927.84 -5.95 -23.69 16 12 C 0.00 0.00 6.57 83.57 0.55 0.55 16 13 C -0.09 -2.10 3.51 -10.45 -0.04 -2.14 16 14 C -0.13 -1.92 5.61 29.85 0.17 -1.75 16 15 C 0.51 10.00 8.10 87.66 0.71 10.71 16 16 N -0.84 -8.64 8.87 -173.54 -1.54 -10.18 16 17 O -0.60 -18.43 16.57 -3.01 -0.05 -18.48 16 18 C 0.01 0.19 7.29 83.57 0.61 0.80 16 19 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 20 H 0.01 0.62 6.72 -2.39 -0.02 0.60 16 21 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 22 H 0.04 1.51 7.56 -2.39 -0.02 1.49 16 23 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.07 2.19 7.43 -2.39 -0.02 2.18 16 26 H 0.09 2.61 7.63 -2.39 -0.02 2.60 16 27 H 0.11 1.41 7.81 -2.38 -0.02 1.39 16 28 H 0.14 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.42 1.23 8.83 -92.71 -0.82 0.41 16 30 H 0.40 3.81 8.93 -92.71 -0.83 2.98 16 31 H 0.08 1.82 7.73 -2.39 -0.02 1.80 16 32 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -77.33 268.24 -2.69 -80.02 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -0.58 Total: 3.43 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 3.24 Total: -19.66 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -7.19 Total: -93.84 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Total: -77.33 -2.69 -80.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382193618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.601 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds