Wall clock time and date at job start Mon Mar 30 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48501 * 109.46871 * 270.00142 * 3 2 1 5 5 H 1.48499 * 109.46860 * 30.00254 * 3 2 1 6 6 H 1.48501 * 109.46980 * 150.00086 * 3 2 1 7 7 C 1.38951 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00025 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00012 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00194 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99914 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.47359 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47255 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.88035 * 54.57908 * 14 13 12 16 16 C 1.54321 * 110.02587 * 175.69754 * 14 13 12 17 17 C 1.55422 * 103.04810 * 141.76409 * 16 14 13 18 18 C 1.54908 * 101.52379 * 324.36667 * 17 16 14 19 19 N 1.47448 * 109.88974 * 293.54803 * 14 13 12 20 20 H 0.97001 * 119.99977 * 359.97438 * 1 2 3 21 21 H 0.97003 * 119.99695 * 0.02562 * 9 7 2 22 22 H 1.09005 * 109.47355 * 60.00076 * 12 10 9 23 23 H 1.09004 * 109.47711 * 300.00159 * 12 10 9 24 24 H 1.08998 * 109.46907 * 60.00369 * 13 12 10 25 25 H 1.08994 * 109.46878 * 300.00503 * 13 12 10 26 26 H 1.09004 * 110.70290 * 260.15162 * 16 14 13 27 27 H 1.09005 * 110.69934 * 23.20280 * 16 14 13 28 28 H 1.08998 * 111.10859 * 206.29820 * 17 16 14 29 29 H 1.08998 * 111.00401 * 82.38939 * 17 16 14 30 30 H 1.09002 * 110.37460 * 278.18013 * 18 17 16 31 31 H 1.08999 * 110.37548 * 155.95084 * 18 17 16 32 32 H 1.00894 * 111.00079 * 3.68846 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4211 0.0000 12 6 5.5606 -2.3707 0.0000 13 6 6.0707 -3.8132 -0.0006 14 6 7.6006 -3.8132 0.0000 15 1 7.9709 -3.2196 0.8358 16 6 8.1290 -5.2591 0.1081 17 6 9.3670 -5.2515 -0.8316 18 6 8.8936 -4.3007 -1.9592 19 7 8.1028 -3.2585 -1.2705 20 1 -0.4850 0.8401 0.0004 21 1 3.8649 -0.3634 -0.0004 22 1 5.9240 -1.8568 0.8900 23 1 5.9241 -1.8568 -0.8900 24 1 5.7074 -4.3266 -0.8909 25 1 5.7073 -4.3274 0.8890 26 1 8.4244 -5.4858 1.1326 27 1 7.3806 -5.9701 -0.2420 28 1 9.5699 -6.2489 -1.2215 29 1 10.2418 -4.8477 -0.3220 30 1 8.2710 -4.8395 -2.6735 31 1 9.7505 -3.8550 -2.4644 32 1 7.3422 -2.9390 -1.8513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388350300.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:30 Heat of formation + Delta-G solvation = -74.721359 kcal Electronic energy + Delta-G solvation = -13922.082298 eV Core-core repulsion = 11494.696117 eV Total energy + Delta-G solvation = -2427.386181 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52853 -39.43824 -36.10748 -34.10573 -33.68585 -30.97931 -29.53266 -26.91457 -24.29198 -21.98806 -21.34223 -21.08576 -20.08342 -17.91498 -17.00160 -16.95193 -16.51784 -16.11684 -15.40749 -14.65647 -14.53319 -14.36961 -14.16237 -13.98579 -13.13703 -12.91723 -12.76486 -12.71903 -12.42676 -12.08192 -12.00339 -11.78225 -11.69885 -11.54724 -11.53733 -10.45757 -10.27348 -9.33984 -8.43819 -6.05103 1.30156 1.34726 1.44054 1.93419 2.21712 2.91151 3.13029 3.36122 3.77061 3.87021 3.93688 4.10280 4.21374 4.34894 4.51241 4.60752 4.67826 4.80078 4.90068 4.97609 5.07684 5.09262 5.22974 5.29003 5.45483 5.53239 5.92606 6.01041 6.43088 6.55799 6.84936 7.37218 7.93635 8.73922 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.060474 B = 0.006030 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.900418 B = 4642.657957 C = 4922.552350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.334 4.334 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.445 3.555 11 O -0.631 6.631 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.082 3.918 15 H 0.091 0.909 16 C -0.142 4.142 17 C -0.123 4.123 18 C 0.038 3.962 19 N -0.687 5.687 20 H 0.280 0.720 21 H 0.391 0.609 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.844 -2.649 -1.357 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.785 3.215 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.463 4.463 8 H 0.072 0.928 9 N -0.231 5.231 10 C 0.234 3.766 11 O -0.517 6.517 12 C -0.157 4.157 13 C -0.146 4.146 14 C -0.028 4.028 15 H 0.109 0.891 16 C -0.181 4.181 17 C -0.161 4.161 18 C -0.091 4.091 19 N -0.318 5.318 20 H 0.089 0.911 21 H 0.226 0.774 22 H 0.126 0.874 23 H 0.125 0.875 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 20.801 -2.889 -1.080 21.029 hybrid contribution -1.333 0.192 -0.324 1.386 sum 19.468 -2.697 -1.404 19.704 Atomic orbital electron populations 1.69806 1.08159 1.29342 1.50102 1.26137 0.96483 1.02753 0.95873 0.85363 0.79478 0.76634 0.80064 1.18008 1.19829 1.15524 1.19050 0.81693 0.94948 1.50631 0.92788 1.42123 1.05825 1.07803 1.67330 1.21256 0.91560 0.83060 0.80747 1.90527 1.72038 1.32981 1.56187 1.21538 0.88640 0.99889 1.05670 1.21730 0.95519 0.95073 1.02244 1.22315 0.91250 0.95312 0.93922 0.89101 1.22932 0.97815 0.95842 1.01467 1.22733 0.97612 0.99885 0.95886 1.22937 0.97795 0.92140 0.96258 1.62152 1.27189 1.36488 1.05979 0.91058 0.77362 0.87364 0.87474 0.93304 0.92179 0.89739 0.92056 0.89753 0.90150 0.94231 0.89605 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.96 21.66 0.30 -56.53 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.96 39.27 27.74 68.60 1.90 41.17 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 7 C -0.33 -19.95 10.16 84.04 0.85 -19.10 16 8 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 9 N -0.59 -28.52 5.09 -306.99 -1.56 -30.08 16 10 C 0.44 20.50 7.78 87.66 0.68 21.18 16 11 O -0.63 -35.67 15.56 -3.07 -0.05 -35.71 16 12 C -0.12 -3.60 5.57 29.85 0.17 -3.43 16 13 C -0.11 -3.08 3.72 30.59 0.11 -2.96 16 14 C 0.08 1.79 3.47 45.26 0.16 1.95 16 15 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 16 C -0.14 -2.70 6.48 31.88 0.21 -2.50 16 17 C -0.12 -1.94 7.10 32.08 0.23 -1.72 16 18 C 0.04 0.67 7.56 86.77 0.66 1.33 16 19 N -0.69 -14.59 7.26 -482.35 -3.50 -18.09 16 20 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 21 H 0.39 15.66 5.76 -92.71 -0.53 15.13 16 22 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 23 H 0.11 2.76 7.01 -2.39 -0.02 2.75 16 24 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 25 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 26 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.06 1.28 7.85 -2.38 -0.02 1.26 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.34 7.42 7.09 -89.70 -0.64 6.78 16 Total: -1.00 -73.83 264.29 0.52 -73.31 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.11 Total: 31.49 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 3.53 Total: -5.56 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.76 Total: -104.70 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.05 Total: -35.71 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal Total: -73.83 0.52 -73.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388350300.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.411 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds