Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46646 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99535 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 C 1.52996 * 109.47159 * 179.72352 * 12 10 9 14 14 C 1.52994 * 109.47118 * 179.97438 * 13 12 10 15 15 H 1.08998 * 110.37214 * 305.69846 * 14 13 12 16 16 C 1.54386 * 110.41170 * 183.34851 * 14 13 12 17 17 C 1.54257 * 105.06079 * 217.37152 * 16 14 13 18 18 C 1.54374 * 105.06273 * 359.97438 * 17 16 14 19 19 N 1.48560 * 110.41335 * 68.05286 * 14 13 12 20 20 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 23 23 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 24 24 H 1.09004 * 109.47066 * 299.99797 * 13 12 10 25 25 H 1.09000 * 109.47234 * 59.99288 * 13 12 10 26 26 H 1.08999 * 110.31822 * 336.26460 * 16 14 13 27 27 H 1.08994 * 110.32344 * 98.36894 * 16 14 13 28 28 H 1.09001 * 110.32486 * 118.89557 * 17 16 14 29 29 H 1.09003 * 110.32237 * 241.00290 * 17 16 14 30 30 H 1.09000 * 110.41176 * 142.63366 * 18 17 16 31 31 H 1.08995 * 110.41621 * 265.07686 * 18 17 16 32 32 H 1.00899 * 110.99856 * 277.81877 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 6 2.2381 -6.0258 -0.0090 14 6 1.4731 -7.3508 -0.0148 15 1 0.7667 -7.3847 0.8146 16 6 2.4548 -8.5397 0.0653 17 6 1.8441 -9.6257 -0.8442 18 6 0.5446 -9.0020 -1.3968 19 7 0.7639 -7.5341 -1.3072 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3906 0.0005 22 1 0.6165 -4.9246 0.8846 23 1 0.6178 -4.9168 -0.8953 24 1 2.8654 -5.9642 -0.8983 25 1 2.8641 -5.9719 0.8816 26 1 3.4371 -8.2449 -0.3040 27 1 2.5294 -8.9006 1.0910 28 1 2.5267 -9.8641 -1.6599 29 1 1.6192 -10.5216 -0.2654 30 1 0.3904 -9.3010 -2.4336 31 1 -0.3082 -9.2956 -0.7847 32 1 -0.1128 -7.0348 -1.3125 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388350301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -78.606061 kcal Electronic energy + Delta-G solvation = -13826.998440 eV Core-core repulsion = 11399.443806 eV Total energy + Delta-G solvation = -2427.554635 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31475 -39.30345 -36.05093 -34.04201 -33.20947 -31.13376 -29.41181 -26.93849 -24.43275 -21.91705 -21.04699 -20.80075 -19.83330 -17.91889 -17.45015 -16.54629 -16.33780 -15.98155 -15.76061 -15.04235 -14.44273 -13.83978 -13.72031 -13.48694 -13.35617 -12.93442 -12.88377 -12.44819 -12.35149 -12.17382 -12.13209 -11.73750 -11.66036 -11.51838 -11.33895 -10.34300 -10.02581 -9.46061 -8.47231 -5.96633 1.39537 1.40935 1.52446 2.05737 2.30241 3.20115 3.22618 3.34300 3.76664 3.91958 4.16669 4.20265 4.29792 4.36086 4.51986 4.66256 4.73292 4.85215 4.90126 5.02701 5.07127 5.16825 5.25836 5.29551 5.40181 5.44357 5.93744 5.99620 6.46834 6.58655 7.11203 7.55677 8.11413 8.70052 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.080308 B = 0.005373 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.574834 B = 5210.040721 C = 5436.305835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.434 3.566 11 O -0.639 6.639 12 C -0.115 4.115 13 C -0.075 4.075 14 C 0.070 3.930 15 H 0.062 0.938 16 C -0.124 4.124 17 C -0.122 4.122 18 C 0.034 3.966 19 N -0.680 5.680 20 H 0.278 0.722 21 H 0.397 0.603 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -15.493 0.019 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.527 6.527 12 C -0.155 4.155 13 C -0.113 4.113 14 C -0.039 4.039 15 H 0.080 0.920 16 C -0.163 4.163 17 C -0.160 4.160 18 C -0.095 4.095 19 N -0.311 5.311 20 H 0.088 0.912 21 H 0.231 0.769 22 H 0.115 0.885 23 H 0.114 0.886 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.688 -15.276 -0.445 15.375 hybrid contribution -0.754 0.940 0.602 1.347 sum -2.442 -14.336 0.157 14.543 Atomic orbital electron populations 1.69666 1.06856 1.29428 1.50158 1.26062 0.96569 1.02454 0.96108 0.84980 0.77786 0.76534 0.78969 1.19736 1.19268 1.19632 1.19673 0.92730 0.84278 1.50254 0.90464 1.42012 1.09342 1.04849 1.64781 1.21170 0.88206 0.86634 0.81727 1.90469 1.16312 1.88389 1.57567 1.21455 0.99010 0.90761 1.04299 1.21130 0.96753 0.91924 1.01525 1.22477 0.95825 0.94263 0.91357 0.92009 1.22364 0.98608 0.94567 1.00719 1.22298 0.96573 0.97940 0.99160 1.22978 0.97200 0.87695 1.01583 1.63655 1.25781 1.08231 1.33388 0.91222 0.76920 0.88484 0.88610 0.93303 0.92509 0.92210 0.90046 0.91382 0.89649 0.89850 0.93014 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 2 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 3 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.34 -19.92 9.68 84.04 0.81 -19.11 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -30.61 5.29 -306.98 -1.62 -32.23 16 10 C 0.43 21.63 7.78 87.66 0.68 22.31 16 11 O -0.64 -37.05 15.56 -3.07 -0.05 -37.09 16 12 C -0.12 -4.07 5.60 29.85 0.17 -3.90 16 13 C -0.07 -2.46 4.10 30.59 0.13 -2.33 16 14 C 0.07 1.72 3.13 45.06 0.14 1.86 16 15 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 16 C -0.12 -2.64 6.55 31.49 0.21 -2.44 16 17 C -0.12 -2.11 7.00 31.49 0.22 -1.89 16 18 C 0.03 0.62 7.47 86.42 0.65 1.26 16 19 N -0.68 -15.86 7.02 -478.68 -3.36 -19.22 16 20 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 21 H 0.40 20.01 7.90 -92.71 -0.73 19.28 16 22 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 23 H 0.10 3.08 7.57 -2.39 -0.02 3.06 16 24 H 0.05 1.86 8.10 -2.38 -0.02 1.84 16 25 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 26 H 0.06 1.44 7.86 -2.39 -0.02 1.42 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.34 7.22 8.50 -89.69 -0.76 6.45 16 Total: -1.00 -67.98 269.08 0.37 -67.61 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.38 Total: 29.98 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 3.47 Total: -4.44 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -4.70 Total: -101.73 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.05 Total: -37.09 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -67.98 0.37 -67.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388350301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.993 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds