Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50706 * 109.47003 * 240.00316 * 2 1 3 5 5 H 1.08002 * 119.99636 * 240.00408 * 4 2 1 6 6 C 1.37873 * 119.99798 * 59.99649 * 4 2 1 7 7 N 1.31508 * 120.00508 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99737 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47155 * 60.00373 * 8 6 4 10 10 H 1.48496 * 109.47192 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47113 * 300.00264 * 8 6 4 12 12 O 1.45193 * 109.47377 * 120.00568 * 2 1 3 13 13 C 1.34231 * 117.00126 * 269.99754 * 12 2 1 14 14 O 1.20833 * 119.99644 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00640 * 179.71955 * 13 12 2 16 16 H 1.09006 * 109.46468 * 60.27874 * 15 13 12 17 17 C 1.53004 * 109.47380 * 300.28077 * 15 13 12 18 18 C 1.52996 * 109.47298 * 180.27355 * 15 13 12 19 19 C 1.53000 * 117.50004 * 248.62388 * 18 15 13 20 20 C 1.53002 * 60.00071 * 252.51550 * 19 18 15 21 21 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46742 * 299.99523 * 1 2 3 23 23 H 1.08999 * 109.47253 * 59.99790 * 1 2 3 24 24 H 0.97003 * 120.00681 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46756 * 59.99337 * 17 15 13 26 26 H 1.08996 * 109.47135 * 179.97438 * 17 15 13 27 27 H 1.08998 * 109.46822 * 299.99937 * 17 15 13 28 28 H 1.09003 * 115.55112 * 34.34052 * 18 15 13 29 29 H 1.08992 * 117.50038 * 0.02562 * 19 18 15 30 30 H 1.08998 * 117.49752 * 145.02496 * 19 18 15 31 31 H 1.09008 * 117.49554 * 252.51357 * 20 19 18 32 32 H 1.08996 * 117.50446 * 107.49419 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5201 -4.0079 10 1 1.8268 -0.4198 -5.2205 11 1 3.8063 -1.1208 -4.0083 12 8 2.0141 -0.6846 1.1854 13 6 2.2173 0.0638 2.2810 14 8 1.9975 1.2516 2.2506 15 6 2.7129 -0.5783 3.5510 16 1 3.6829 -1.0413 3.3694 17 6 1.7155 -1.6457 4.0059 18 6 2.8524 0.4868 4.6404 19 6 4.2666 0.8443 5.1020 20 6 3.3466 0.0311 6.0148 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.7094 1.1619 -3.4844 25 1 1.6162 -2.4044 3.2297 26 1 2.0743 -2.1104 4.9242 27 1 0.7456 -1.1826 4.1875 28 1 2.1143 1.2885 4.6114 29 1 5.0976 0.3210 4.6294 30 1 4.4593 1.8814 5.3766 31 1 2.9340 0.5333 6.8900 32 1 3.5723 -1.0275 6.1430 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388583372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = -80.795096 kcal Electronic energy + Delta-G solvation = -14247.063796 eV Core-core repulsion = 11787.121487 eV Total energy + Delta-G solvation = -2459.942310 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.72973 -37.49567 -35.49091 -33.28036 -32.02270 -29.44369 -25.30629 -25.01565 -22.42703 -22.21728 -20.37202 -19.07105 -17.13002 -16.54478 -15.82796 -15.02085 -14.82040 -14.33380 -14.15949 -13.06457 -12.94759 -12.25251 -12.18689 -11.89310 -11.63269 -11.41312 -11.16419 -11.03365 -10.83891 -10.77853 -10.40374 -10.29314 -10.25355 -9.94284 -9.51385 -9.41756 -8.88566 -8.47129 -6.16539 -4.23571 3.07232 3.27276 3.30495 3.32859 3.59310 3.95215 4.34995 4.69806 4.94250 5.05008 5.16115 5.25778 5.40455 5.52680 5.61489 5.72772 5.89546 5.97905 6.10424 6.12935 6.31770 6.41181 6.67397 6.91230 6.94623 7.21921 7.62155 7.75663 7.97415 8.17109 8.68460 8.92597 9.41917 10.90896 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.055053 B = 0.006813 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.476275 B = 4108.511566 C = 4156.332048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.356 6.356 13 C 0.457 3.543 14 O -0.521 6.521 15 C -0.056 4.056 16 H 0.101 0.899 17 C -0.138 4.138 18 C -0.137 4.137 19 C -0.178 4.178 20 C -0.177 4.177 21 H 0.036 0.964 22 H 0.015 0.985 23 H 0.099 0.901 24 H 0.266 0.734 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -3.433 12.409 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.272 6.272 13 C 0.300 3.700 14 O -0.411 6.411 15 C -0.076 4.076 16 H 0.119 0.881 17 C -0.196 4.196 18 C -0.155 4.155 19 C -0.215 4.215 20 C -0.214 4.214 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.117 0.883 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.905 -2.966 12.189 12.877 hybrid contribution 0.236 -0.192 -0.912 0.961 sum 3.141 -3.158 11.277 12.125 Atomic orbital electron populations 1.22151 0.97619 1.00046 1.01338 1.20609 0.91363 0.93906 0.77923 0.93664 1.21000 1.32502 1.13455 0.88966 0.91394 1.24889 0.94938 0.95098 0.99058 1.69890 1.36082 1.22548 1.24251 0.86332 0.79204 0.79539 0.81036 1.19934 1.21028 1.20004 1.86471 1.75754 1.43639 1.21344 1.23231 0.74822 0.85913 0.86065 1.90575 1.48660 1.17056 1.84770 1.20518 1.01321 0.95927 0.89796 0.88116 1.21697 0.98436 0.97700 1.01740 1.22107 0.98765 1.00693 0.93949 1.23015 0.93711 1.00921 1.03871 1.22959 1.04376 1.00460 0.93643 0.94461 0.96580 0.88302 0.92360 0.90956 0.91688 0.92196 0.86581 0.88774 0.88793 0.88803 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.33 37.16 0.35 -3.64 16 2 C 0.21 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.87 8.90 -34.44 -0.31 -15.18 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 O -0.36 -8.65 9.76 -39.26 -0.38 -9.03 16 13 C 0.46 9.80 7.23 36.00 0.26 10.06 16 14 O -0.52 -12.62 14.87 -18.76 -0.28 -12.90 16 15 C -0.06 -0.87 2.98 -91.77 -0.27 -1.15 16 16 H 0.10 1.42 7.90 -51.93 -0.41 1.01 16 17 C -0.14 -1.82 8.96 37.16 0.33 -1.49 16 18 C -0.14 -1.91 4.76 -90.62 -0.43 -2.34 16 19 C -0.18 -2.12 10.18 -26.73 -0.27 -2.39 16 20 C -0.18 -1.86 9.73 -26.73 -0.26 -2.12 16 21 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 26 H 0.06 0.67 7.29 -51.93 -0.38 0.29 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.12 1.81 7.47 -51.93 -0.39 1.43 16 29 H 0.09 1.06 8.05 -51.93 -0.42 0.65 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.09 0.88 7.61 -51.93 -0.40 0.48 16 LS Contribution 273.21 15.07 4.12 4.12 Total: -1.00 -30.68 273.21 -6.46 -37.14 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.76 Total: 0.22 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.77 Total: -10.79 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.63 Total: -25.00 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.66 Total: -21.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.68 -6.46 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388583372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.656 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds