Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50706 * 109.47003 * 240.00316 * 2 1 3 5 5 H 1.08002 * 119.99636 * 240.00408 * 4 2 1 6 6 C 1.37873 * 119.99798 * 59.99649 * 4 2 1 7 7 N 1.31508 * 120.00508 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99737 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47155 * 60.00373 * 8 6 4 10 10 H 1.48496 * 109.47192 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47113 * 300.00264 * 8 6 4 12 12 O 1.45193 * 109.47377 * 120.00568 * 2 1 3 13 13 C 1.34231 * 117.00126 * 269.99754 * 12 2 1 14 14 O 1.20833 * 119.99644 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00640 * 179.71955 * 13 12 2 16 16 H 1.09006 * 109.46468 * 60.27874 * 15 13 12 17 17 C 1.53004 * 109.47380 * 300.28077 * 15 13 12 18 18 C 1.52996 * 109.47298 * 180.27355 * 15 13 12 19 19 C 1.53000 * 117.50004 * 248.62388 * 18 15 13 20 20 C 1.53002 * 60.00071 * 252.51550 * 19 18 15 21 21 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46742 * 299.99523 * 1 2 3 23 23 H 1.08999 * 109.47253 * 59.99790 * 1 2 3 24 24 H 0.97003 * 120.00681 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46756 * 59.99337 * 17 15 13 26 26 H 1.08996 * 109.47135 * 179.97438 * 17 15 13 27 27 H 1.08998 * 109.46822 * 299.99937 * 17 15 13 28 28 H 1.09003 * 115.55112 * 34.34052 * 18 15 13 29 29 H 1.08992 * 117.50038 * 0.02562 * 19 18 15 30 30 H 1.08998 * 117.49752 * 145.02496 * 19 18 15 31 31 H 1.09008 * 117.49554 * 252.51357 * 20 19 18 32 32 H 1.08996 * 117.50446 * 107.49419 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5201 -4.0079 10 1 1.8268 -0.4198 -5.2205 11 1 3.8063 -1.1208 -4.0083 12 8 2.0141 -0.6846 1.1854 13 6 2.2173 0.0638 2.2810 14 8 1.9975 1.2516 2.2506 15 6 2.7129 -0.5783 3.5510 16 1 3.6829 -1.0413 3.3694 17 6 1.7155 -1.6457 4.0059 18 6 2.8524 0.4868 4.6404 19 6 4.2666 0.8443 5.1020 20 6 3.3466 0.0311 6.0148 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.7094 1.1619 -3.4844 25 1 1.6162 -2.4044 3.2297 26 1 2.0743 -2.1104 4.9242 27 1 0.7456 -1.1826 4.1875 28 1 2.1143 1.2885 4.6114 29 1 5.0976 0.3210 4.6294 30 1 4.4593 1.8814 5.3766 31 1 2.9340 0.5333 6.8900 32 1 3.5723 -1.0275 6.1430 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388583372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = -98.127873 kcal Electronic energy + Delta-G solvation = -14247.815402 eV Core-core repulsion = 11787.121487 eV Total energy + Delta-G solvation = -2460.693915 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.45318 -38.73792 -37.32989 -35.36050 -33.27801 -31.51328 -27.47889 -26.25889 -24.10098 -23.11829 -22.07247 -20.53486 -18.91763 -18.47316 -17.56592 -16.79183 -16.56467 -15.63262 -15.47074 -14.77927 -14.34065 -14.12903 -13.75152 -13.27968 -13.18341 -12.93022 -12.92131 -12.82612 -12.40507 -12.27905 -12.17657 -11.92029 -11.57352 -11.33438 -11.16650 -10.99879 -10.88896 -10.60707 -8.29768 -6.47429 1.35263 1.41268 1.45499 1.53614 1.99735 2.40768 2.94157 3.00697 3.61586 3.78338 3.99883 4.10943 4.27633 4.43893 4.47247 4.56120 4.75114 4.78023 4.81327 4.88954 4.98677 5.03516 5.16686 5.26466 5.30352 5.33887 5.47166 5.61225 5.90948 6.09053 6.58288 6.97904 7.25148 8.77956 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.055053 B = 0.006813 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.476275 B = 4108.511566 C = 4156.332048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.985 3.015 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.268 1.268 12 O -0.362 6.362 13 C 0.447 3.553 14 O -0.556 6.556 15 C -0.045 4.045 16 H 0.120 0.880 17 C -0.134 4.134 18 C -0.168 4.168 19 C -0.184 4.184 20 C -0.142 4.142 21 H 0.047 0.953 22 H 0.021 0.979 23 H 0.080 0.920 24 H 0.271 0.729 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -5.174 13.334 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.193 1.193 12 O -0.278 6.278 13 C 0.292 3.708 14 O -0.447 6.447 15 C -0.064 4.064 16 H 0.138 0.862 17 C -0.191 4.191 18 C -0.186 4.186 19 C -0.220 4.220 20 C -0.179 4.179 21 H 0.066 0.934 22 H 0.040 0.960 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.810 -4.711 13.144 14.474 hybrid contribution -0.040 0.426 -1.126 1.205 sum 3.771 -4.285 12.018 13.304 Atomic orbital electron populations 1.21970 0.96778 1.00413 1.00675 1.20326 0.92048 0.91952 0.79445 0.97891 1.21284 1.33552 1.13975 0.89957 0.91339 1.25874 0.94654 0.95657 1.02256 1.70016 1.36592 1.23696 1.25332 0.85203 0.78780 0.78651 0.76587 1.18673 1.20176 1.19295 1.86470 1.76113 1.43725 1.21479 1.24620 0.73631 0.85743 0.86770 1.90553 1.50145 1.18790 1.85239 1.20685 1.02390 0.96689 0.86676 0.86196 1.21732 0.97599 0.96616 1.03176 1.21984 0.99834 1.00631 0.96178 1.23148 0.92849 1.01757 1.04290 1.23100 1.01236 1.01670 0.91857 0.93399 0.96011 0.90105 0.91951 0.91772 0.87713 0.92928 0.89202 0.88053 0.88598 0.87216 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.22 12.26 2.56 29.85 0.08 12.34 16 3 H 0.00 0.21 7.16 -2.39 -0.02 0.19 16 4 C -0.55 -31.90 8.90 25.60 0.23 -31.68 16 5 H 0.07 3.86 7.81 -2.91 -0.02 3.83 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.73 11.32 21.44 0.24 -53.49 16 8 Si 0.99 43.22 29.54 68.60 2.03 45.25 16 9 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 O -0.36 -17.97 9.76 -51.42 -0.50 -18.47 16 13 C 0.45 19.59 7.23 71.23 0.52 20.11 16 14 O -0.56 -28.14 14.87 21.94 0.33 -27.82 16 15 C -0.05 -1.35 2.98 -11.54 -0.03 -1.39 16 16 H 0.12 3.12 7.90 -2.38 -0.02 3.10 16 17 C -0.13 -3.24 8.96 71.98 0.65 -2.59 16 18 C -0.17 -4.47 4.76 -10.79 -0.05 -4.52 16 19 C -0.18 -3.99 10.18 30.59 0.31 -3.68 16 20 C -0.14 -2.47 9.73 30.60 0.30 -2.17 16 21 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 22 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.08 4.59 6.07 -2.39 -0.01 4.57 16 24 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 25 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 26 H 0.10 1.71 7.29 -2.39 -0.02 1.69 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 2.87 7.47 -2.39 -0.02 2.85 16 29 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.12 1.55 7.61 -2.39 -0.02 1.54 16 Total: -1.00 -68.09 273.21 6.29 -61.80 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.09 Total: 11.82 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.11 Total: -19.09 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.24 Total: -53.49 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.18 Total: -46.29 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.09 6.29 -61.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388583372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.330 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds