Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53778 * 113.61268 * 2 1 4 4 C 1.53778 * 87.08001 * 219.93684 * 3 2 1 5 5 O 1.45198 * 113.61658 * 139.98284 * 4 3 2 6 6 C 1.34230 * 117.00173 * 149.99688 * 5 4 3 7 7 O 1.20822 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99763 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00355 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99890 * 14 12 10 16 16 H 1.48501 * 109.47062 * 209.99841 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99640 * 14 12 10 18 18 C 1.53777 * 87.08320 * 25.43243 * 4 3 2 19 19 H 1.09005 * 109.47522 * 60.00073 * 1 2 3 20 20 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47278 * 299.99709 * 1 2 3 22 22 H 1.09002 * 112.84958 * 131.19600 * 2 1 3 23 23 H 1.08995 * 113.61820 * 105.38365 * 3 2 1 24 24 H 1.08998 * 113.61548 * 334.48568 * 3 2 1 25 25 H 1.08999 * 113.61159 * 270.79956 * 4 3 2 26 26 H 1.09000 * 109.47318 * 299.99486 * 8 6 5 27 27 H 1.09000 * 109.47161 * 60.00117 * 8 6 5 28 28 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 29 29 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 30 30 H 0.96991 * 119.99891 * 179.97438 * 13 12 10 31 31 H 1.08999 * 113.61593 * 89.11491 * 18 4 3 32 32 H 1.08995 * 113.61634 * 220.01968 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8656 -0.9859 5 8 3.5307 1.7964 -2.0480 6 6 4.7741 1.7254 -2.5487 7 8 5.5551 0.9127 -2.1135 8 6 5.1963 2.6602 -3.6528 9 6 6.6486 2.3714 -4.0380 10 6 7.0711 3.3065 -5.1417 11 1 6.3736 4.0343 -5.5293 12 6 8.3483 3.2337 -5.6558 13 7 8.7168 4.0494 -6.6194 14 14 9.5549 1.9753 -4.9849 15 1 9.4378 0.7146 -5.7607 16 1 10.9378 2.5032 -5.1038 17 1 9.2482 1.7081 -3.5566 18 6 2.1479 -0.1847 -1.3961 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8901 22 1 1.9533 -0.6616 0.7558 23 1 2.5636 1.7030 0.9629 24 1 1.4950 2.1701 -0.4302 25 1 4.0723 0.4420 -0.4996 26 1 4.5541 2.5108 -4.5208 27 1 5.1092 3.6910 -3.3094 28 1 7.2912 2.5205 -3.1702 29 1 6.7353 1.3406 -4.3815 30 1 9.6155 3.9984 -6.9808 31 1 1.4974 0.1407 -2.2079 32 1 2.5671 -1.1773 -1.5602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388665305.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = -105.603389 kcal Electronic energy + Delta-G solvation = -13755.360631 eV Core-core repulsion = 11294.342553 eV Total energy + Delta-G solvation = -2461.018078 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67781 -39.65297 -36.95488 -35.64408 -33.44374 -30.48642 -28.43626 -26.74772 -24.65969 -22.89031 -21.39068 -20.48405 -19.36971 -18.43881 -17.34548 -17.07515 -16.49774 -16.22761 -15.19290 -15.00645 -14.62810 -14.34521 -13.86105 -13.48332 -13.43964 -13.23701 -12.95912 -12.90000 -12.27543 -12.04257 -11.97132 -11.80585 -11.63694 -11.46780 -11.44049 -11.24354 -11.05108 -10.79888 -8.32943 -6.37319 1.19896 1.33553 1.35523 1.49418 1.77462 2.33718 3.02364 3.45890 3.49539 3.74737 3.78694 3.87951 4.25762 4.37429 4.43037 4.55547 4.71018 4.74892 4.79393 4.84597 4.87094 5.07803 5.12522 5.24168 5.29480 5.34562 5.41822 5.55074 5.64338 6.20331 6.68035 6.81356 7.28001 8.82703 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.077855 B = 0.005433 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.558276 B = 5152.902328 C = 5348.319978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C -0.122 4.122 4 C 0.030 3.970 5 O -0.347 6.347 6 C 0.466 3.534 7 O -0.544 6.544 8 C -0.093 4.093 9 C 0.002 3.998 10 C -0.533 4.533 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.939 3.061 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.259 1.259 18 C -0.145 4.145 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.103 0.897 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.269 0.731 31 H 0.095 0.905 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.796 -7.920 13.988 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 C -0.159 4.159 4 C -0.024 4.024 5 O -0.264 6.264 6 C 0.312 3.688 7 O -0.435 6.435 8 C -0.130 4.130 9 C -0.035 4.035 10 C -0.571 4.571 11 H 0.070 0.930 12 C -0.183 4.183 13 N -0.582 5.582 14 Si 0.763 3.237 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.184 1.184 18 C -0.183 4.183 19 H 0.075 0.925 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.121 0.879 23 H 0.104 0.896 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.456 -8.125 14.034 22.402 hybrid contribution 1.066 -0.384 -0.135 1.141 sum -14.390 -8.509 13.899 21.741 Atomic orbital electron populations 1.21680 0.92599 1.02591 1.02533 1.22249 0.97226 0.96251 0.96178 1.23346 0.95970 0.98505 0.98079 1.24852 0.97639 0.91590 0.88365 1.86631 1.31561 1.57715 1.50491 1.24364 0.79577 0.82561 0.82330 1.90580 1.53973 1.38520 1.60398 1.21344 0.98449 0.98530 0.94691 1.19318 0.92341 0.96220 0.95670 1.21342 0.98528 1.18553 1.18669 0.93040 1.25798 1.00132 0.97544 0.94781 1.70016 1.20317 1.39770 1.28112 0.85816 0.78273 0.79557 0.80013 1.19216 1.20280 1.18364 1.23563 0.97173 0.98251 0.99264 0.92473 0.91634 0.91243 0.87861 0.89597 0.88272 0.88749 0.86901 0.86886 0.96529 0.96654 0.92241 0.88672 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.71 71.98 0.70 -0.90 16 2 C -0.10 -1.52 4.36 -10.27 -0.04 -1.57 16 3 C -0.12 -2.20 7.48 31.12 0.23 -1.97 16 4 C 0.03 0.77 4.25 31.12 0.13 0.90 16 5 O -0.35 -10.96 10.24 -51.41 -0.53 -11.49 16 6 C 0.47 17.55 7.96 71.24 0.57 18.11 16 7 O -0.54 -23.59 15.16 21.98 0.33 -23.25 16 8 C -0.09 -3.63 5.75 29.85 0.17 -3.46 16 9 C 0.00 0.10 3.33 29.85 0.10 0.20 16 10 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 11 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 12 C 0.02 0.91 5.47 84.65 0.46 1.38 16 13 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 14 Si 0.94 45.97 27.47 68.60 1.88 47.86 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 18 C -0.14 -2.95 7.48 31.12 0.23 -2.72 16 19 H 0.06 0.70 7.95 -2.38 -0.02 0.68 16 20 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 21 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 22 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.10 1.73 8.10 -2.39 -0.02 1.71 16 25 H 0.09 2.69 7.07 -2.39 -0.02 2.67 16 26 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 27 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 28 H 0.02 0.83 7.16 -2.38 -0.02 0.82 16 29 H 0.02 0.76 7.53 -2.39 -0.02 0.74 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.09 1.90 7.97 -2.39 -0.02 1.88 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -67.60 272.09 5.82 -61.79 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.03 Total: 3.88 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 2.80 Total: -20.40 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.30 Total: -58.38 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.19 Total: -34.74 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.86 kcal Total: -67.60 5.82 -61.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388665305.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.818 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds