Wall clock time and date at job start Mon Mar 30 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.53010 * 109.47295 * 119.99618 * 2 1 3 5 5 H 1.08998 * 109.46615 * 299.13192 * 4 2 1 6 6 C 1.50699 * 109.47333 * 179.12685 * 4 2 1 7 7 H 1.07999 * 119.99722 * 354.66271 * 6 4 2 8 8 C 1.37875 * 119.99734 * 174.93711 * 6 4 2 9 9 N 1.31515 * 119.99646 * 173.78437 * 8 6 4 10 10 Si 1.86793 * 120.00032 * 353.78458 * 8 6 4 11 11 H 1.48498 * 109.47322 * 85.82823 * 10 8 6 12 12 H 1.48502 * 109.46884 * 205.82207 * 10 8 6 13 13 H 1.48500 * 109.47284 * 325.82157 * 10 8 6 14 14 O 1.45203 * 109.46903 * 59.12681 * 4 2 1 15 15 C 1.34230 * 117.00043 * 270.00382 * 14 4 2 16 16 O 1.20829 * 120.00023 * 359.97438 * 15 14 4 17 17 C 1.50697 * 120.00302 * 179.97438 * 15 14 4 18 18 C 1.52997 * 117.50073 * 248.74541 * 17 15 14 19 19 C 1.53004 * 117.50113 * 180.08456 * 17 15 14 20 20 H 1.09002 * 109.47502 * 299.99825 * 1 2 3 21 21 H 1.08999 * 109.47357 * 60.00489 * 1 2 3 22 22 H 1.09001 * 109.47011 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47630 * 239.99839 * 2 1 3 24 24 H 1.09003 * 109.47095 * 183.37037 * 3 2 1 25 25 H 1.08998 * 109.47178 * 303.36889 * 3 2 1 26 26 H 1.08995 * 109.47529 * 63.37137 * 3 2 1 27 27 H 0.96999 * 120.00083 * 179.97438 * 9 8 6 28 28 H 1.09006 * 115.54454 * 34.41298 * 17 15 14 29 29 H 1.09004 * 117.49987 * 0.02562 * 18 17 15 30 30 H 1.09006 * 117.49915 * 145.01675 * 18 17 15 31 31 H 1.08996 * 117.49896 * 214.97869 * 19 17 15 32 32 H 1.08999 * 117.49528 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6894 -0.1984 2.1392 6 6 3.5468 -0.7400 1.2386 7 1 4.0854 -0.3608 0.3827 8 6 4.2376 -1.2465 2.3190 9 7 5.5451 -1.3762 2.2612 10 14 3.3165 -1.7482 3.8646 11 1 2.8338 -3.1453 3.7216 12 1 4.2262 -1.6563 5.0348 13 1 2.1574 -0.8421 4.0663 14 8 1.5390 -2.0840 1.2599 15 6 0.3609 -2.2956 1.8674 16 8 -0.2319 -1.3726 2.3741 17 6 -0.2225 -3.6841 1.9176 18 6 -1.4860 -3.9497 1.0968 19 6 -1.5690 -3.8597 2.6227 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1283 1.4431 -0.0604 25 1 1.6281 1.9735 -0.8582 26 1 1.7268 1.9386 0.9186 27 1 6.0312 -1.7322 3.0214 28 1 0.5008 -4.4950 2.0048 29 1 -1.8952 -3.1201 0.5201 30 1 -1.5943 -4.9354 0.6442 31 1 -1.7318 -4.7862 3.1732 32 1 -2.0327 -2.9708 3.0505 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388766374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:33 Heat of formation + Delta-G solvation = -75.445204 kcal Electronic energy + Delta-G solvation = -14875.148808 eV Core-core repulsion = 12415.438488 eV Total energy + Delta-G solvation = -2459.710321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.86384 -37.03515 -35.35408 -34.08765 -32.52428 -28.04504 -26.38531 -24.66204 -22.55649 -22.34615 -19.65745 -19.06964 -17.38508 -17.07698 -15.72183 -15.56983 -14.56487 -14.37519 -13.63403 -13.17432 -12.80956 -12.30245 -12.24054 -11.60319 -11.57489 -11.45438 -11.25484 -11.18882 -10.65799 -10.52093 -10.48027 -10.39182 -10.17583 -9.79551 -9.63844 -9.26469 -8.93225 -8.73768 -6.31557 -4.37142 2.83106 3.24706 3.29024 3.39580 3.59686 4.02704 4.30449 4.88409 4.97832 5.00591 5.27331 5.61264 5.65932 5.70635 5.74934 5.80385 6.01980 6.12361 6.19991 6.26407 6.46178 6.55115 6.55385 6.69410 6.79068 7.04443 7.11250 7.44458 7.72082 8.27651 8.71012 8.81235 9.31030 10.77885 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.014651 C = 0.010477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.943852 B = 1910.664374 C = 2671.763134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.130 4.130 4 C 0.179 3.821 5 H 0.050 0.950 6 C -0.509 4.509 7 H 0.089 0.911 8 C 0.090 3.910 9 N -0.874 5.874 10 Si 0.869 3.131 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.259 1.259 14 O -0.350 6.350 15 C 0.474 3.526 16 O -0.525 6.525 17 C -0.174 4.174 18 C -0.151 4.151 19 C -0.154 4.154 20 H 0.058 0.942 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -3.124 -1.532 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.188 4.188 4 C 0.128 3.872 5 H 0.068 0.932 6 C -0.545 4.545 7 H 0.107 0.893 8 C -0.117 4.117 9 N -0.510 5.510 10 Si 0.695 3.305 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.183 1.183 14 O -0.267 6.267 15 C 0.318 3.682 16 O -0.417 6.417 17 C -0.193 4.193 18 C -0.188 4.188 19 C -0.191 4.191 20 H 0.077 0.923 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.940 -2.855 -1.317 11.383 hybrid contribution -0.244 -0.393 0.876 0.991 sum -11.185 -3.248 -0.441 11.655 Atomic orbital electron populations 1.21943 0.96616 1.00646 1.00822 1.21328 0.94033 0.96786 0.99494 1.21659 1.02238 0.94839 1.00023 1.21257 0.94318 0.76553 0.95080 0.93222 1.21068 0.87108 1.41558 1.04789 0.89275 1.25057 0.94709 0.93115 0.98837 1.69915 1.06951 1.42655 1.31489 0.86915 0.80547 0.80402 0.82594 1.19574 1.21185 1.18291 1.86963 1.32734 1.38873 1.68089 1.22426 0.80970 0.89373 0.75452 1.90551 1.61317 1.44924 1.44904 1.21908 0.92409 0.95902 1.09072 1.22931 0.98045 1.03447 0.94401 1.23007 0.97228 1.03945 0.94908 0.92298 0.93983 0.94008 0.91427 0.91291 0.94167 0.93312 0.92037 0.85372 0.88292 0.87742 0.87943 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.79 37.15 0.29 -2.43 16 2 C -0.10 -2.07 2.68 -90.62 -0.24 -2.31 16 3 C -0.13 -2.50 8.89 37.16 0.33 -2.17 16 4 C 0.18 4.47 1.15 -27.88 -0.03 4.44 16 5 H 0.05 1.33 5.72 -51.93 -0.30 1.03 16 6 C -0.51 -14.23 8.53 -34.44 -0.29 -14.52 16 7 H 0.09 2.60 7.23 -52.49 -0.38 2.22 16 8 C 0.09 2.57 5.47 -17.82 -0.10 2.48 16 9 N -0.87 -25.96 13.96 55.43 0.77 -25.19 16 10 Si 0.87 22.35 26.04 -169.99 -4.43 17.93 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.26 -6.77 6.49 56.52 0.37 -6.40 16 14 O -0.35 -8.54 8.45 -39.26 -0.33 -8.87 16 15 C 0.47 10.31 5.33 36.00 0.19 10.51 16 16 O -0.53 -12.17 13.40 -18.75 -0.25 -12.42 16 17 C -0.17 -2.92 6.30 -91.77 -0.58 -3.50 16 18 C -0.15 -1.96 10.24 -26.69 -0.27 -2.24 16 19 C -0.15 -2.08 10.05 -26.69 -0.27 -2.35 16 20 H 0.06 1.17 7.45 -51.93 -0.39 0.78 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.80 6.18 -51.93 -0.32 0.48 16 23 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 24 H 0.07 1.40 6.90 -51.93 -0.36 1.04 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.13 2.03 8.14 -51.93 -0.42 1.61 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.11 1.56 7.67 -51.93 -0.40 1.16 16 LS Contribution 263.56 15.07 3.97 3.97 Total: -1.00 -30.63 263.56 -5.93 -36.56 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.69 Total: 0.13 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.97 Total: -12.10 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.77 Total: -25.19 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.58 Total: -21.29 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.43 Total: 17.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.63 -5.93 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388766374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.882 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds