Wall clock time and date at job start Mon Mar 30 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.53010 * 109.47295 * 119.99618 * 2 1 3 5 5 H 1.08998 * 109.46615 * 299.13192 * 4 2 1 6 6 C 1.50699 * 109.47333 * 179.12685 * 4 2 1 7 7 H 1.07999 * 119.99722 * 354.66271 * 6 4 2 8 8 C 1.37875 * 119.99734 * 174.93711 * 6 4 2 9 9 N 1.31515 * 119.99646 * 173.78437 * 8 6 4 10 10 Si 1.86793 * 120.00032 * 353.78458 * 8 6 4 11 11 H 1.48498 * 109.47322 * 85.82823 * 10 8 6 12 12 H 1.48502 * 109.46884 * 205.82207 * 10 8 6 13 13 H 1.48500 * 109.47284 * 325.82157 * 10 8 6 14 14 O 1.45203 * 109.46903 * 59.12681 * 4 2 1 15 15 C 1.34230 * 117.00043 * 270.00382 * 14 4 2 16 16 O 1.20829 * 120.00023 * 359.97438 * 15 14 4 17 17 C 1.50697 * 120.00302 * 179.97438 * 15 14 4 18 18 C 1.52997 * 117.50073 * 248.74541 * 17 15 14 19 19 C 1.53004 * 117.50113 * 180.08456 * 17 15 14 20 20 H 1.09002 * 109.47502 * 299.99825 * 1 2 3 21 21 H 1.08999 * 109.47357 * 60.00489 * 1 2 3 22 22 H 1.09001 * 109.47011 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47630 * 239.99839 * 2 1 3 24 24 H 1.09003 * 109.47095 * 183.37037 * 3 2 1 25 25 H 1.08998 * 109.47178 * 303.36889 * 3 2 1 26 26 H 1.08995 * 109.47529 * 63.37137 * 3 2 1 27 27 H 0.96999 * 120.00083 * 179.97438 * 9 8 6 28 28 H 1.09006 * 115.54454 * 34.41298 * 17 15 14 29 29 H 1.09004 * 117.49987 * 0.02562 * 18 17 15 30 30 H 1.09006 * 117.49915 * 145.01675 * 18 17 15 31 31 H 1.08996 * 117.49896 * 214.97869 * 19 17 15 32 32 H 1.08999 * 117.49528 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6894 -0.1984 2.1392 6 6 3.5468 -0.7400 1.2386 7 1 4.0854 -0.3608 0.3827 8 6 4.2376 -1.2465 2.3190 9 7 5.5451 -1.3762 2.2612 10 14 3.3165 -1.7482 3.8646 11 1 2.8338 -3.1453 3.7216 12 1 4.2262 -1.6563 5.0348 13 1 2.1574 -0.8421 4.0663 14 8 1.5390 -2.0840 1.2599 15 6 0.3609 -2.2956 1.8674 16 8 -0.2319 -1.3726 2.3741 17 6 -0.2225 -3.6841 1.9176 18 6 -1.4860 -3.9497 1.0968 19 6 -1.5690 -3.8597 2.6227 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1283 1.4431 -0.0604 25 1 1.6281 1.9735 -0.8582 26 1 1.7268 1.9386 0.9186 27 1 6.0312 -1.7322 3.0214 28 1 0.5008 -4.4950 2.0048 29 1 -1.8952 -3.1201 0.5201 30 1 -1.5943 -4.9354 0.6442 31 1 -1.7318 -4.7862 3.1732 32 1 -2.0327 -2.9708 3.0505 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388766374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:33 Heat of formation + Delta-G solvation = -93.702929 kcal Electronic energy + Delta-G solvation = -14875.940523 eV Core-core repulsion = 12415.438488 eV Total energy + Delta-G solvation = -2460.502035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.57911 -38.56061 -36.85573 -35.85761 -34.65892 -30.01100 -27.94939 -26.26403 -24.39045 -23.37960 -21.21325 -20.87007 -19.30837 -18.87543 -17.43071 -17.30026 -16.34725 -15.77574 -15.21749 -15.08531 -14.58488 -14.05858 -13.77155 -13.33265 -13.24922 -13.14076 -12.84861 -12.56303 -12.48272 -12.29486 -11.99438 -11.80215 -11.64571 -11.57037 -11.30309 -11.19297 -10.93117 -10.76220 -8.52121 -6.60504 1.17064 1.17650 1.26458 1.31374 1.95169 2.17216 2.82561 2.98489 3.69140 3.85721 3.95658 4.01687 4.10493 4.19505 4.35191 4.62965 4.66983 4.78672 4.83470 4.87623 4.94081 4.97996 5.06558 5.16502 5.17158 5.29138 5.44653 5.54004 5.89242 6.13981 6.49575 7.01214 7.11277 8.61480 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.014651 C = 0.010477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.943852 B = 1910.664374 C = 2671.763134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.126 4.126 4 C 0.183 3.817 5 H 0.029 0.971 6 C -0.517 4.517 7 H 0.065 0.935 8 C 0.046 3.954 9 N -0.913 5.913 10 Si 0.916 3.084 11 H -0.262 1.262 12 H -0.272 1.272 13 H -0.270 1.270 14 O -0.367 6.367 15 C 0.466 3.534 16 O -0.546 6.546 17 C -0.209 4.209 18 C -0.126 4.126 19 C -0.139 4.139 20 H 0.047 0.953 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.274 0.726 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 -4.213 -1.718 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 C -0.183 4.183 4 C 0.131 3.869 5 H 0.047 0.953 6 C -0.554 4.554 7 H 0.083 0.917 8 C -0.157 4.157 9 N -0.551 5.551 10 Si 0.741 3.259 11 H -0.187 1.187 12 H -0.197 1.197 13 H -0.195 1.195 14 O -0.284 6.284 15 C 0.312 3.688 16 O -0.438 6.438 17 C -0.228 4.228 18 C -0.162 4.162 19 C -0.176 4.176 20 H 0.066 0.934 21 H 0.094 0.906 22 H 0.055 0.945 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.113 0.887 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.221 -3.954 -1.501 13.881 hybrid contribution 0.388 -0.041 0.882 0.965 sum -12.833 -3.995 -0.619 13.454 Atomic orbital electron populations 1.21825 0.94534 1.00650 1.01883 1.21343 0.95765 0.97345 0.97349 1.21613 1.01095 0.94028 1.01547 1.21007 0.92621 0.77100 0.96132 0.95283 1.21223 0.88987 1.41195 1.03946 0.91661 1.25666 0.95291 0.93489 1.01222 1.69988 1.08043 1.44485 1.32572 0.86173 0.79286 0.80097 0.80312 1.18695 1.19704 1.19476 1.86852 1.34688 1.37824 1.69016 1.23326 0.79812 0.91432 0.74260 1.90533 1.61466 1.46243 1.45554 1.22014 0.94172 0.92670 1.13930 1.23151 0.93693 1.05146 0.94239 1.23183 0.93606 1.04931 0.95861 0.93429 0.90605 0.94537 0.91693 0.93235 0.90534 0.93552 0.91607 0.84493 0.88662 0.84115 0.84510 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 7.79 71.98 0.56 -4.22 16 2 C -0.10 -4.16 2.68 -10.79 -0.03 -4.19 16 3 C -0.13 -4.74 8.89 71.98 0.64 -4.10 16 4 C 0.18 9.25 1.15 29.85 0.03 9.29 16 5 H 0.03 1.59 5.72 -2.39 -0.01 1.58 16 6 C -0.52 -29.71 8.53 25.60 0.22 -29.49 16 7 H 0.07 3.97 7.23 -2.91 -0.02 3.95 16 8 C 0.05 2.72 5.47 84.65 0.46 3.18 16 9 N -0.91 -55.46 13.96 21.45 0.30 -55.16 16 10 Si 0.92 46.58 26.04 68.60 1.79 48.36 16 11 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.27 -14.08 6.49 99.48 0.65 -13.43 16 14 O -0.37 -17.88 8.45 -51.41 -0.43 -18.31 16 15 C 0.47 19.86 5.33 71.24 0.38 20.24 16 16 O -0.55 -24.98 13.40 21.95 0.29 -24.68 16 17 C -0.21 -6.52 6.30 -11.54 -0.07 -6.60 16 18 C -0.13 -2.77 10.24 30.62 0.31 -2.46 16 19 C -0.14 -3.28 10.05 30.62 0.31 -2.97 16 20 H 0.05 1.82 7.45 -2.39 -0.02 1.81 16 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.04 1.33 6.18 -2.39 -0.01 1.32 16 23 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.05 2.03 6.90 -2.39 -0.02 2.02 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.14 4.00 8.14 -2.38 -0.02 3.98 16 29 H 0.09 2.20 8.14 -2.38 -0.02 2.19 16 30 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.50 7.67 -2.39 -0.02 2.48 16 Total: -1.00 -67.47 263.56 5.79 -61.68 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.03 Total: 9.43 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 2.82 Total: -21.32 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.30 Total: -55.16 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.14 Total: -42.99 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.79 Total: 48.36 kcal Total: -67.47 5.79 -61.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388766374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.024 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds