Wall clock time and date at job start Mon Mar 30 2020 02:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 C 1.53004 * 109.46636 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46808 * 179.97438 * 16 15 13 18 18 C 1.53002 * 117.49525 * 243.74800 * 17 16 15 19 19 C 1.53005 * 117.49628 * 175.09063 * 17 16 15 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08994 * 109.47055 * 299.98976 * 15 13 12 25 25 H 1.08998 * 109.47424 * 60.00159 * 15 13 12 26 26 H 1.08995 * 109.47312 * 299.99809 * 16 15 13 27 27 H 1.09007 * 109.47032 * 60.00091 * 16 15 13 28 28 H 1.08990 * 115.54995 * 29.41721 * 17 16 15 29 29 H 1.08997 * 117.50330 * 0.02562 * 18 17 16 30 30 H 1.08998 * 117.49661 * 145.02453 * 18 17 16 31 31 H 1.08993 * 117.49471 * 214.97972 * 19 17 16 32 32 H 1.08997 * 117.49861 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 6 2.8642 0.4895 4.6369 17 6 3.3735 -0.1614 5.9245 18 6 2.4507 -0.1305 7.1445 19 6 3.6949 0.7603 7.1027 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 2.0104 -1.3370 3.8775 25 1 3.6884 -1.0397 3.3633 26 1 3.5732 1.2494 4.3085 27 1 1.8952 0.9527 4.8230 28 1 4.0000 -1.0430 5.7896 29 1 1.4807 0.3532 7.0298 30 1 2.4705 -0.9915 7.8125 31 1 4.5327 0.4848 7.7431 32 1 3.5439 1.8303 6.9604 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388813012.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:30 Heat of formation + Delta-G solvation = -102.329254 kcal Electronic energy + Delta-G solvation = -13817.329117 eV Core-core repulsion = 11356.453017 eV Total energy + Delta-G solvation = -2460.876101 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.29908 -38.58190 -37.52465 -35.33115 -33.35957 -31.58832 -27.48540 -26.58334 -23.38277 -23.15610 -21.41578 -21.12244 -18.80227 -18.41593 -17.22668 -17.18708 -16.39537 -16.17398 -15.20386 -15.02964 -14.52288 -14.11129 -13.86094 -13.20839 -13.06886 -13.00862 -12.82098 -12.45570 -12.39647 -12.25321 -12.18506 -12.12285 -11.59168 -11.40140 -11.07723 -10.99436 -10.75720 -10.59794 -8.29102 -6.46591 1.37120 1.42134 1.46161 1.54289 2.05949 2.42929 2.94745 3.01422 3.75959 3.80194 4.05388 4.11040 4.27595 4.39717 4.51269 4.60958 4.68670 4.76803 4.83247 4.84265 5.02511 5.08985 5.11524 5.17598 5.31821 5.42965 5.48349 5.62340 5.92286 6.10878 6.59149 6.98829 7.25960 8.78525 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.073093 B = 0.005497 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.983737 B = 5092.079265 C = 5239.380416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.551 4.551 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.277 1.277 10 H -0.268 1.268 11 H -0.263 1.263 12 O -0.366 6.366 13 C 0.440 3.560 14 O -0.560 6.560 15 C -0.099 4.099 16 C -0.073 4.073 17 C -0.157 4.157 18 C -0.179 4.179 19 C -0.181 4.181 20 H 0.022 0.978 21 H 0.080 0.920 22 H 0.046 0.954 23 H 0.271 0.729 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 -4.456 14.563 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.202 1.202 10 H -0.193 1.193 11 H -0.187 1.187 12 O -0.282 6.282 13 C 0.286 3.714 14 O -0.452 6.452 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.175 4.175 18 C -0.216 4.216 19 C -0.218 4.218 20 H 0.041 0.959 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.913 -3.990 14.375 15.423 hybrid contribution -0.054 0.282 -0.987 1.028 sum 3.859 -3.708 13.387 14.417 Atomic orbital electron populations 1.21977 0.96806 1.00408 1.00746 1.20328 0.92044 0.92020 0.79470 0.97720 1.21293 1.33545 1.13991 0.89995 0.91333 1.25872 0.94660 0.95655 1.02245 1.70020 1.36561 1.23719 1.25301 0.85203 0.78797 0.78623 0.76599 1.20220 1.19260 1.18738 1.86480 1.76182 1.43910 1.21660 1.24820 0.73705 0.85865 0.87008 1.90570 1.50429 1.18838 1.85344 1.21491 1.05021 1.00053 0.87045 1.20919 1.01306 0.96387 0.92461 1.22267 1.04311 1.02281 0.88632 1.23145 0.94858 1.02883 1.00685 1.23057 1.00124 0.97351 1.01236 0.95878 0.90124 0.93451 0.91977 0.85673 0.85708 0.92233 0.92414 0.85853 0.89312 0.87242 0.87252 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.21 12.12 2.56 29.85 0.08 12.19 16 3 H 0.00 0.32 7.16 -2.38 -0.02 0.30 16 4 C -0.55 -31.78 8.90 25.60 0.23 -31.56 16 5 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.48 11.32 21.45 0.24 -53.23 16 8 Si 0.99 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 O -0.37 -17.93 9.86 -51.45 -0.51 -18.44 16 13 C 0.44 18.63 7.93 71.24 0.56 19.20 16 14 O -0.56 -27.57 15.20 21.98 0.33 -27.23 16 15 C -0.10 -2.71 5.77 29.85 0.17 -2.54 16 16 C -0.07 -1.86 4.79 30.60 0.15 -1.71 16 17 C -0.16 -2.90 5.73 -10.79 -0.06 -2.96 16 18 C -0.18 -2.94 10.18 30.62 0.31 -2.63 16 19 C -0.18 -3.01 10.26 30.62 0.31 -2.70 16 20 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.08 4.55 6.07 -2.39 -0.01 4.54 16 22 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 27 H 0.06 1.61 7.83 -2.38 -0.02 1.59 16 28 H 0.12 1.88 8.07 -2.39 -0.02 1.86 16 29 H 0.09 1.56 8.03 -2.39 -0.02 1.54 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -67.22 276.36 6.05 -61.17 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.08 Total: 10.83 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 2.87 Total: -18.20 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.24 Total: -53.23 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.17 Total: -45.67 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -67.22 6.05 -61.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388813012.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.158 kcal (2) G-P(sol) polarization free energy of solvation -67.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds