Wall clock time and date at job start Mon Mar 30 2020 02:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99584 * 2 1 4 4 H 1.48507 * 109.46970 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47411 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.46883 * 150.00205 * 3 2 1 7 7 C 1.37869 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00385 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99951 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00069 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00049 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.46959 * 319.99772 * 13 11 10 15 15 N 1.46899 * 109.47244 * 199.99894 * 13 11 10 16 16 C 1.52997 * 109.47078 * 79.99684 * 13 11 10 17 17 C 1.53004 * 109.47236 * 184.99974 * 16 13 11 18 18 C 1.53001 * 117.49960 * 243.62444 * 17 16 13 19 19 C 1.53001 * 117.50024 * 175.00153 * 17 16 13 20 20 H 0.96993 * 120.00334 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47103 * 59.99536 * 9 7 2 22 22 H 1.09003 * 109.47203 * 299.99915 * 9 7 2 23 23 H 0.96998 * 119.99794 * 359.97438 * 10 9 7 24 24 H 1.00893 * 111.00096 * 176.04982 * 15 13 11 25 25 H 1.00903 * 110.99833 * 299.99603 * 15 13 11 26 26 H 1.09001 * 109.47630 * 305.00104 * 16 13 11 27 27 H 1.09004 * 109.47346 * 65.00234 * 16 13 11 28 28 H 1.08999 * 115.54757 * 29.32655 * 17 16 13 29 29 H 1.08998 * 117.50038 * 359.97438 * 18 17 16 30 30 H 1.08996 * 117.49770 * 145.01902 * 18 17 16 31 31 H 1.08996 * 117.49649 * 214.97891 * 19 17 16 32 32 H 1.09000 * 117.49567 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 0.0000 13 6 2.7333 -6.0287 0.0006 14 1 3.5683 -5.7932 -0.6594 15 7 2.0627 -7.2466 -0.4737 16 6 3.2541 -6.2537 1.4215 17 6 4.3394 -7.3320 1.4022 18 6 4.0605 -8.6288 2.1647 19 6 5.0719 -7.6208 2.7141 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 3.1568 -3.4353 0.0002 24 1 2.7139 -8.0140 -0.5438 25 1 1.2844 -7.4862 0.1220 26 1 3.6726 -5.3239 1.8067 27 1 2.4334 -6.5757 2.0626 28 1 4.9136 -7.4045 0.4786 29 1 3.1040 -8.7137 2.6805 30 1 4.4512 -9.5547 1.7428 31 1 6.1279 -7.8835 2.6535 32 1 4.7808 -7.0422 3.5908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388843231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:16 Heat of formation + Delta-G solvation = -54.771581 kcal Electronic energy + Delta-G solvation = -13819.004956 eV Core-core repulsion = 11392.483862 eV Total energy + Delta-G solvation = -2426.521094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79402 -38.61631 -36.20739 -35.33390 -34.32521 -30.14702 -29.07623 -25.93626 -23.90139 -23.21032 -21.45404 -21.19200 -19.03962 -17.87364 -17.18488 -16.81602 -16.19948 -16.00005 -15.74749 -15.02694 -14.84665 -14.43812 -14.18722 -13.87171 -13.72047 -12.92969 -12.74907 -12.62770 -12.40008 -12.31255 -12.20774 -11.49333 -11.29351 -10.89254 -10.80335 -10.69046 -9.84248 -9.60646 -8.29289 -6.46299 1.43268 1.45938 1.57110 1.74287 2.30758 2.53817 2.88361 3.05567 3.59638 3.77800 3.84835 4.06854 4.07541 4.19528 4.32958 4.62345 4.80928 4.84806 4.88155 5.05976 5.10684 5.22843 5.28259 5.34165 5.48223 5.68504 5.84280 6.10833 6.62461 6.64777 6.91727 7.23229 7.49560 8.83112 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044446 B = 0.006034 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.822474 B = 4639.322686 C = 5076.524163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.706 5.706 11 C 0.497 3.503 12 O -0.597 6.597 13 C 0.095 3.905 14 H 0.122 0.878 15 N -0.832 5.832 16 C -0.111 4.111 17 C -0.155 4.155 18 C -0.178 4.178 19 C -0.178 4.178 20 H 0.269 0.731 21 H -0.015 1.015 22 H -0.013 1.013 23 H 0.408 0.592 24 H 0.361 0.639 25 H 0.345 0.655 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.220 -13.592 3.469 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.356 5.356 11 C 0.284 3.716 12 O -0.478 6.478 13 C -0.020 4.020 14 H 0.140 0.860 15 N -0.365 5.365 16 C -0.151 4.151 17 C -0.173 4.173 18 C -0.215 4.215 19 C -0.215 4.215 20 H 0.078 0.922 21 H 0.003 0.997 22 H 0.005 0.995 23 H 0.243 0.757 24 H 0.177 0.823 25 H 0.159 0.841 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.069 -13.217 2.801 18.116 hybrid contribution 0.272 0.679 0.949 1.198 sum 12.340 -12.538 3.750 17.987 Atomic orbital electron populations 1.70145 1.08345 1.28588 1.50001 1.26086 0.95767 1.03974 0.93799 0.85138 0.78491 0.76849 0.78622 1.19587 1.20956 1.17813 1.21619 0.94325 0.90516 1.52894 0.89731 1.18536 0.88745 0.84474 0.93936 1.46183 1.11115 1.05502 1.72775 1.21454 0.89805 0.85001 0.75334 1.90612 1.19510 1.85482 1.52163 1.21266 0.94519 0.89196 0.97010 0.85992 1.58493 1.13755 1.06003 1.58261 1.21823 0.97852 0.99832 0.95594 1.22227 1.00623 0.96820 0.97593 1.23134 1.00686 0.93908 1.03774 1.23028 0.98576 1.03191 0.96713 0.92244 0.99735 0.99543 0.75653 0.82287 0.84146 0.90744 0.92534 0.86000 0.89502 0.87154 0.87303 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -30.56 9.28 25.60 0.24 -30.32 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 14.94 5.43 85.63 0.46 15.40 16 10 N -0.71 -30.47 5.55 -466.77 -2.59 -33.06 16 11 C 0.50 20.51 7.08 87.66 0.62 21.13 16 12 O -0.60 -30.63 16.25 -3.04 -0.05 -30.68 16 13 C 0.10 2.61 3.16 44.17 0.14 2.75 16 14 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 15 N -0.83 -21.57 8.95 -171.81 -1.54 -23.11 16 16 C -0.11 -2.53 5.12 30.59 0.16 -2.37 16 17 C -0.15 -2.50 4.92 -10.79 -0.05 -2.55 16 18 C -0.18 -2.56 10.18 30.60 0.31 -2.25 16 19 C -0.18 -2.65 10.25 30.60 0.31 -2.34 16 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 22 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 23 H 0.41 14.46 8.32 -92.71 -0.77 13.69 16 24 H 0.36 6.71 8.30 -89.70 -0.74 5.97 16 25 H 0.35 9.65 8.58 -89.69 -0.77 8.88 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.44 7.88 -2.39 -0.02 1.42 16 28 H 0.12 1.66 8.07 -2.39 -0.02 1.64 16 29 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -71.74 277.85 -0.36 -72.10 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -1.15 Total: 26.77 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 2.65 Total: 0.08 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -3.84 Total: -112.78 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.05 Total: -30.68 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -71.74 -0.36 -72.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388843231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.330 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds