Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 H 1.08993 * 109.47278 * 54.99900 * 3 2 1 5 5 C 1.50704 * 109.46771 * 175.00063 * 3 2 1 6 6 H 1.07998 * 120.00571 * 119.99773 * 5 3 2 7 7 C 1.37887 * 119.99671 * 299.99295 * 5 3 2 8 8 N 1.31514 * 120.00086 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99784 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46793 * 90.00407 * 9 7 5 11 11 H 1.48497 * 109.47311 * 210.00105 * 9 7 5 12 12 H 1.48491 * 109.47214 * 330.00626 * 9 7 5 13 13 O 1.45201 * 109.46934 * 294.99468 * 3 2 1 14 14 C 1.34222 * 117.00137 * 90.00375 * 13 3 2 15 15 O 1.20833 * 119.99852 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00432 * 179.71953 * 14 13 3 17 17 H 1.09005 * 115.54242 * 34.61124 * 16 14 13 18 18 C 1.52997 * 117.50384 * 248.90029 * 16 14 13 19 19 C 1.52994 * 117.50206 * 180.27447 * 16 14 13 20 20 H 1.08997 * 117.49838 * 359.97438 * 19 16 14 21 21 C 1.52997 * 117.50226 * 214.98239 * 19 16 14 22 22 H 1.08997 * 109.47473 * 300.00217 * 1 2 3 23 23 H 1.09001 * 109.46626 * 60.00747 * 1 2 3 24 24 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47135 * 239.99460 * 2 1 3 26 26 H 1.09001 * 109.46380 * 119.99745 * 2 1 3 27 27 H 0.96993 * 119.99970 * 179.97438 * 8 7 5 28 28 H 1.08997 * 117.49467 * 359.97438 * 18 16 14 29 29 H 1.08999 * 117.49814 * 145.01596 * 18 16 14 30 30 H 1.08999 * 109.47294 * 60.00088 * 21 19 16 31 31 H 1.08999 * 109.47377 * 180.02562 * 21 19 16 32 32 H 1.09003 * 109.47246 * 300.00150 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0050 0.8800 1.3813 10 1 6.4427 2.1129 2.0838 11 1 6.4390 -0.3110 2.1548 12 1 6.6131 0.8394 0.0272 13 8 1.6559 2.0916 -1.2408 14 6 0.4728 2.7253 -1.2562 15 8 -0.2189 2.7377 -0.2655 16 6 0.0101 3.4272 -2.5068 17 1 0.2969 2.9529 -3.4454 18 6 -0.0524 4.9556 -2.4772 19 6 -1.3445 4.1367 -2.4588 20 1 -1.9014 4.0953 -1.5227 21 6 -2.1928 4.1267 -3.7320 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 3.8292 -0.0616 2.9496 28 1 0.2408 5.4534 -1.5529 29 1 0.1935 5.4873 -3.3965 30 1 -2.4166 3.0972 -4.0115 31 1 -3.1233 4.6654 -3.5530 32 1 -1.6427 4.6108 -4.5390 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393253216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = -80.930642 kcal Electronic energy + Delta-G solvation = -14364.296612 eV Core-core repulsion = 11904.348425 eV Total energy + Delta-G solvation = -2459.948187 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80206 -37.31232 -35.35367 -33.45655 -31.33537 -28.83412 -27.31388 -24.47496 -22.91450 -21.02434 -20.06959 -19.22274 -17.22937 -16.53048 -15.67842 -15.27275 -14.59128 -14.00048 -13.64629 -13.19034 -12.83494 -12.65361 -12.25327 -11.83425 -11.47167 -11.36550 -11.24025 -11.16090 -10.93676 -10.64746 -10.29695 -10.22207 -10.00225 -9.76486 -9.51415 -9.33223 -8.77610 -8.43909 -6.17093 -4.24043 2.87522 3.25278 3.30566 3.34495 3.60679 3.99774 4.33989 4.83756 4.88622 5.09369 5.14914 5.31408 5.61569 5.70760 5.73641 5.86010 6.00744 6.13505 6.25647 6.32632 6.34920 6.49123 6.90075 6.99714 7.19479 7.29825 7.63873 7.76154 7.98280 8.18408 8.68687 8.94007 9.41232 10.89787 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.047224 B = 0.007754 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.774679 B = 3610.039548 C = 3978.640859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.481 3.519 15 O -0.519 6.519 16 C -0.163 4.163 17 H 0.128 0.872 18 C -0.148 4.148 19 C -0.128 4.128 20 H 0.117 0.883 21 C -0.121 4.121 22 H 0.052 0.948 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.109 0.891 27 H 0.266 0.734 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 5.113 -8.784 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.324 3.676 15 O -0.409 6.409 16 C -0.182 4.182 17 H 0.146 0.854 18 C -0.185 4.185 19 C -0.146 4.146 20 H 0.135 0.865 21 C -0.178 4.178 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.744 4.978 -8.283 11.784 hybrid contribution 0.974 -0.192 0.281 1.032 sum -5.769 4.787 -8.002 10.965 Atomic orbital electron populations 1.21859 0.98366 0.98965 1.00791 1.22017 0.92659 0.99368 1.03334 1.20679 0.95003 0.88797 0.78721 0.93589 1.21058 0.89721 1.38890 1.06219 0.91342 1.24891 0.99245 0.94761 0.95069 1.69891 1.35384 1.37885 1.09489 0.86282 0.83895 0.77681 0.78341 1.20413 1.20938 1.19589 1.86460 1.33978 1.62354 1.44040 1.22222 0.80670 0.76614 0.88104 1.90590 1.55697 1.58945 1.35695 1.21859 1.02998 0.95890 0.97493 0.85439 1.23113 1.00591 0.90829 1.04002 1.22437 0.89198 1.01928 1.01078 0.86484 1.21386 0.99209 1.02147 0.95104 0.92861 0.94880 0.94832 0.93983 0.87345 0.92401 0.88170 0.87721 0.91940 0.91814 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.57 37.16 0.32 -2.90 16 2 C -0.14 -3.46 5.49 -26.73 -0.15 -3.60 16 3 C 0.22 6.00 2.25 -27.88 -0.06 5.94 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.83 8.90 -34.43 -0.31 -15.13 16 6 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.38 11.29 55.43 0.63 -24.75 16 9 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 O -0.35 -8.67 9.81 -39.24 -0.38 -9.05 16 14 C 0.48 10.36 6.20 36.00 0.22 10.58 16 15 O -0.52 -12.29 13.40 -18.76 -0.25 -12.54 16 16 C -0.16 -2.59 6.02 -91.78 -0.55 -3.14 16 17 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 18 C -0.15 -1.94 9.88 -26.73 -0.26 -2.20 16 19 C -0.13 -1.69 5.92 -90.63 -0.54 -2.23 16 20 H 0.12 1.71 7.67 -51.93 -0.40 1.31 16 21 C -0.12 -1.19 10.19 37.16 0.38 -0.81 16 22 H 0.05 1.26 7.80 -51.93 -0.40 0.85 16 23 H 0.03 0.72 6.06 -51.93 -0.31 0.40 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 LS Contribution 269.61 15.07 4.06 4.06 Total: -1.00 -30.33 269.61 -6.72 -37.05 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.71 Total: 0.90 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.04 Total: -11.86 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.63 Total: -24.75 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.64 Total: -21.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.33 -6.72 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393253216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.880 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds